Ss1.1-rfcc13b_e4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACCTGATCCCACAAAATGGGTTATCAGAATGGTCAGGCAATTGGGACCTTCCGGTGTC ACCATTAAGATGGCATCTCTCAAAAGAGCAGGGGTTCCTTTTTTAGATGGTGGATCTTCA AATGGATAATTCTGCCATTTTCATTTCCATTTCCTGAAAGTCAGGGTCGGCTTGTGAAAA GTTGTTAAACAACATGCTAAATGTGAAATGTCAACCCTCACTCTAAACTTTCCCTGTTCA GAGCATCACATGAAGACTTCATGGGTTTTATAGTGGCTTTCTGATTTGGGTAGTCCATTG AAAAAGGGAGTTTGAAAGTTGTTGTATACTGTTAACGATTGTCTGCCCATGTCCTGCCTG AAATACCATGATGGTTTATGAAAAGTATCTTTAATAAAGCTGGATACAGTTTGAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACCTGATCCCACAAAATGGGTTATCAGAATGGTCAGGCAATTGGGACCTTCCGGTGTC ACCATTAAGATGGCATCTCTCAAAAGAGCAGGGGTTCCTTTTTTAGATGGTGGATCTTCA AATGGATAATTCTGCCATTTTCATTTCCATTTCCTGAAAGTCAGGGTCGGCTTGTGAAAA GTTGTTAAACAACATGCTAAATGTGAAATGTCAACCCTCACTCTAAACTTTCCCTGTTCA GAGCATCACATGAAGACTTCATGGGTTTTATAGTGGCTTTCTGATTTGGGTAGTCCATTG AAAAAGGGAGTTTGAAAGTTGTTGTATACTGTTAACGATTGTCTGCCCATGTCCTGCCTG AAATACCATGATGGTTTATGAAAAGTATCTTTAATAAAGCTGGATACAGTTTGAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 10-101, - strand, RNAz p=0.921638 | |
| 34-131, - strand, RNAz p=0.769177 | |
| 311-413, - strand, RNAz p=0.767877 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 10-101, - strand, RNAz p=0.921638 | |
| 34-131, - strand, RNAz p=0.769177 | |
| 311-413, - strand, RNAz p=0.767877 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 10-413, gnl|bosTau2|chr2 (78339614-78340014) | |
| 10-413, gnl|canFam2|chr11 (20026297-20025635) | |
| 10-413, gnl|canFam2|chr18 (20211329-20210639) | |
| 10-413, gnl|canFam2|chr18 (20211330-20211066) | |
| 10-413, gnl|canFam2|chr2 (76471109-76470537) | |
| 10-413, gnl|canFam2|chr22 (8004998-8005476) | |
| 10-413, gnl|dasNov1|scaffold_134148 (855-140) | |
| 10-413, gnl|dasNov1|scaffold_22554 (1496-914) | |
| 10-413, gnl|dasNov1|scaffold_5546 (86582-86318) | |
| 10-413, gnl|dasNov1|scaffold_69205 (7345-6675) | |
| 10-413, gnl|dasNov1|scaffold_69205 (7041-6566) | |
| 10-413, gnl|echTel1|scaffold_292755 (54500-54025) | |
| 10-413, gnl|echTel1|scaffold_292755 (54036-54297) | |
| 10-413, gnl|echTel1|scaffold_311021 (36595-37297) | |
| 10-413, gnl|echTel1|scaffold_311021 (37373-36702) | |
| 10-413, gnl|echTel1|scaffold_311021 (37155-36573) | |
| 10-413, gnl|galGal2|chr23 (150467-151210) | |
| 10-413, gnl|galGal2|chr23 (151277-150568) | |
| 10-413, gnl|galGal2|chr23 (151066-150446) | |
| 10-413, gnl|galGal2|chr23 (150944-150466) | |
| 10-413, gnl|galGal2|chr23 (150466-150732) | |
| 10-413, gnl|hg17|chr1 (26486043-26486628) | |
| 10-413, gnl|Hg17|chr1 (26486205-26486597) | |
| 10-413, gnl|hg17|chr14 (22802143-22802837) | |
| 10-413, gnl|hg17|chr14 (63329435-63330118) | |
| 10-413, gnl|hg17|chr4 (168347316-168347581) | |
| 10-413, gnl|hg17|chrX (24132364-24132846) | |
| 10-413, gnl|loxAfr1|scaffold_14094 (6479-7195) | |
| 10-413, gnl|loxAfr1|scaffold_14094 (7283-6586) | |
| 10-413, gnl|loxAfr1|scaffold_14094 (7052-6455) | |
| 10-413, gnl|loxAfr1|scaffold_14094 (6962-6477) | |
| 10-413, gnl|loxAfr1|scaffold_4831 (17642-17378) | |
| 10-413, gnl|mm7|chr4 (133343721-133343152) | |
| 10-413, gnl|Mm7|chr4 (133343566-133343180) | |
| 10-413, gnl|mm7|chr5 (84060038-84059343) | |
| 10-413, gnl|mm7|chr5 (84059272-84059927) | |
| 10-413, gnl|mm7|chr5 (45736599-45737069) | |
| 10-413, gnl|mm7|chr8 (70827005-70827271) | |
| 10-413, gnl|monDom2|scaffold_3 (42800355-42801122) | |
| 10-413, gnl|monDom2|scaffold_3 (42801197-42800468) | |
| 10-413, gnl|monDom2|scaffold_3 (42800869-42800356) | |
| 10-413, gnl|monDom2|scaffold_74 (4254993-4254727) | |
| 10-413, gnl|monDom2|scaffold_91 (4064091-4064728) | |
| 10-413, gnl|oryCun1|scaffold_124966 (5781-5104) | |
| 10-413, gnl|oryCun1|scaffold_124966 (5769-5508) | |
| 10-413, gnl|oryCun1|scaffold_181601 (10955-11613) | |
| 10-413, gnl|oryCun1|scaffold_181601 (11166-11736) | |
| 10-413, gnl|oryCun1|scaffold_181601 (11245-11714) | |
| 10-413, gnl|panTro1|chr1 (27176869-27177454) | |
| 10-413, gnl|panTro1|chr15 (21774354-21775052) | |
| 10-413, gnl|panTro1|chr15 (62892743-62893428) | |
| 10-413, gnl|panTro1|chr3 (185924076-185924341) | |
| 10-413, gnl|panTro1|chrX (24936339-24936806) | |
| 10-413, gnl|rheMac2|chr1 (29108036-29108622) | |
| 10-413, gnl|rheMac2|chr5 (159179196-159179455) | |
| 10-413, gnl|rheMac2|chr7 (86101684-86102711) | |
| 10-413, gnl|rheMac2|chr7 (126800991-126801604) | |
| 10-413, gnl|rheMac2|chrX (22180043-22180524) | |
| 10-413, gnl|rn3|chr16 (33979946-33980402) | |
| 10-413, gnl|rn3|chr5 (152722190-152722881) | |
| 10-413, gnl|rn3|chr5 (152722953-152722291) | |
| 10-413, gnl|rn3|chr5 (152722745-152722168) | |
| 10-413, gnl|rn3|chr5 (152722192-152722452) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-413, gnl|bosTau2|chr2 (78339614-78340014) | |
| 10-413, gnl|canFam2|chr11 (20026297-20025635) | |
| 10-413, gnl|canFam2|chr18 (20211329-20210639) | |
| 10-413, gnl|canFam2|chr18 (20211330-20211066) | |
| 10-413, gnl|canFam2|chr2 (76471109-76470537) | |
| 10-413, gnl|canFam2|chr22 (8004998-8005476) | |
| 10-413, gnl|dasNov1|scaffold_134148 (855-140) | |
| 10-413, gnl|dasNov1|scaffold_22554 (1496-914) | |
| 10-413, gnl|dasNov1|scaffold_5546 (86582-86318) | |
| 10-413, gnl|dasNov1|scaffold_69205 (7345-6675) | |
| 10-413, gnl|dasNov1|scaffold_69205 (7041-6566) | |
| 10-413, gnl|echTel1|scaffold_292755 (54500-54025) | |
| 10-413, gnl|echTel1|scaffold_292755 (54036-54297) | |
| 10-413, gnl|echTel1|scaffold_311021 (36595-37297) | |
| 10-413, gnl|echTel1|scaffold_311021 (37373-36702) | |
| 10-413, gnl|echTel1|scaffold_311021 (37155-36573) | |
| 10-413, gnl|galGal2|chr23 (150467-151210) | |
| 10-413, gnl|galGal2|chr23 (151277-150568) | |
| 10-413, gnl|galGal2|chr23 (151066-150446) | |
| 10-413, gnl|galGal2|chr23 (150944-150466) | |
| 10-413, gnl|galGal2|chr23 (150466-150732) | |
| 10-413, gnl|hg17|chr1 (26486043-26486628) | |
| 10-413, gnl|Hg17|chr1 (26486205-26486597) | |
| 10-413, gnl|hg17|chr14 (22802143-22802837) | |
| 10-413, gnl|hg17|chr14 (63329435-63330118) | |
| 10-413, gnl|hg17|chr4 (168347316-168347581) | |
| 10-413, gnl|hg17|chrX (24132364-24132846) | |
| 10-413, gnl|loxAfr1|scaffold_14094 (6479-7195) | |
| 10-413, gnl|loxAfr1|scaffold_14094 (7283-6586) | |
| 10-413, gnl|loxAfr1|scaffold_14094 (7052-6455) | |
| 10-413, gnl|loxAfr1|scaffold_14094 (6962-6477) | |
| 10-413, gnl|loxAfr1|scaffold_4831 (17642-17378) | |
| 10-413, gnl|mm7|chr4 (133343721-133343152) | |
| 10-413, gnl|Mm7|chr4 (133343566-133343180) | |
| 10-413, gnl|mm7|chr5 (84060038-84059343) | |
| 10-413, gnl|mm7|chr5 (84059272-84059927) | |
| 10-413, gnl|mm7|chr5 (45736599-45737069) | |
| 10-413, gnl|mm7|chr8 (70827005-70827271) | |
| 10-413, gnl|monDom2|scaffold_3 (42800355-42801122) | |
| 10-413, gnl|monDom2|scaffold_3 (42801197-42800468) | |
| 10-413, gnl|monDom2|scaffold_3 (42800869-42800356) | |
| 10-413, gnl|monDom2|scaffold_74 (4254993-4254727) | |
| 10-413, gnl|monDom2|scaffold_91 (4064091-4064728) | |
| 10-413, gnl|oryCun1|scaffold_124966 (5781-5104) | |
| 10-413, gnl|oryCun1|scaffold_124966 (5769-5508) | |
| 10-413, gnl|oryCun1|scaffold_181601 (10955-11613) | |
| 10-413, gnl|oryCun1|scaffold_181601 (11166-11736) | |
| 10-413, gnl|oryCun1|scaffold_181601 (11245-11714) | |
| 10-413, gnl|panTro1|chr1 (27176869-27177454) | |
| 10-413, gnl|panTro1|chr15 (21774354-21775052) | |
| 10-413, gnl|panTro1|chr15 (62892743-62893428) | |
| 10-413, gnl|panTro1|chr3 (185924076-185924341) | |
| 10-413, gnl|panTro1|chrX (24936339-24936806) | |
| 10-413, gnl|rheMac2|chr1 (29108036-29108622) | |
| 10-413, gnl|rheMac2|chr5 (159179196-159179455) | |
| 10-413, gnl|rheMac2|chr7 (86101684-86102711) | |
| 10-413, gnl|rheMac2|chr7 (126800991-126801604) | |
| 10-413, gnl|rheMac2|chrX (22180043-22180524) | |
| 10-413, gnl|rn3|chr16 (33979946-33980402) | |
| 10-413, gnl|rn3|chr5 (152722190-152722881) | |
| 10-413, gnl|rn3|chr5 (152722953-152722291) | |
| 10-413, gnl|rn3|chr5 (152722745-152722168) | |
| 10-413, gnl|rn3|chr5 (152722192-152722452) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| lnt (0.284616) | |
| fcc (0.197785) | |
| eye (0.170503) | |
| nca (0.136874) | |
| ecc (0.115035) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.284616) | |
| fcc (0.197785) | |
| eye (0.170503) | |
| nca (0.136874) | |
| ecc (0.115035) |