Non-Coding RNA Search

Ss1.1-rfcc14b_j9.5

Sequence:


               
               GGCAGGCCCAGCATGCGCGAGGCGGACATCGGGCAGCAGGCCGGCTGCCGGCACCCTTTC
TCCAGTCAGTGTTCGGTGTATTTTCATTTTGTGAATTGGGGGTGGGGGGAGGGAGGGATA
ATTTATTTTTGAAGAAGGTTGGAGATGTCAAGTTTGGTCCACTTGCCGTGCAGAAAGGGA
CCCACTGAAGGGCCCCTCGGGCAGTGGTCCCCTGGGCTCCCCGTAGAGCGGGAGTGCCGT
GACTGGCCTGTGCCCTGCTTCGGGGGGGGGCACCGGGAGGTGGGCAGCCTCTCAGGCCAG
CCCCCTCCAGCTCATGACCCTGTTTGGCCTTTCTTGGGGAGCAGATGGGATATTCCCACT
CAGCAGCCCCTAGCTGTCCCAGAGGGAAACCCTGGAGCCATCCTTTAAGCCCACAAGATG
CCCCCGGGCCGGAGCAGCCAGCACGTCAGAGTTCAGGGGGTGAGGCCTGGCCCAGCCTGA
TGGGAACGGCTCACCTCCGCAGCTGCAGCTGACCCCAGGACAGTGTCCCGGGCCTGGAGT
GACCCATCTGGCAGCTCTCCTGGATATCAGCAATGAGACCGCCAGGTCCTTGGGGTCTGC
CTTTTGCCTGGACCACGGGGACAAGAGGCCCGAGGGCCTCTCCCAGGCTGTGGCAGTCGT
CCTGGGCAGCCATCGTGGAAGCAATAAAGCTTTTCCCTGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGGCCCAGCATGCGCGAGGCGGACATCGGGCAGCAGGCCGGCTGCCGGCACCCTTTC
TCCAGTCAGTGTTCGGTGTATTTTCATTTTGTGAATTGGGGGTGGGGGGAGGGAGGGATA
ATTTATTTTTGAAGAAGGTTGGAGATGTCAAGTTTGGTCCACTTGCCGTGCAGAAAGGGA
CCCACTGAAGGGCCCCTCGGGCAGTGGTCCCCTGGGCTCCCCGTAGAGCGGGAGTGCCGT
GACTGGCCTGTGCCCTGCTTCGGGGGGGGGCACCGGGAGGTGGGCAGCCTCTCAGGCCAG
CCCCCTCCAGCTCATGACCCTGTTTGGCCTTTCTTGGGGAGCAGATGGGATATTCCCACT
CAGCAGCCCCTAGCTGTCCCAGAGGGAAACCCTGGAGCCATCCTTTAAGCCCACAAGATG
CCCCCGGGCCGGAGCAGCCAGCACGTCAGAGTTCAGGGGGTGAGGCCTGGCCCAGCCTGA
TGGGAACGGCTCACCTCCGCAGCTGCAGCTGACCCCAGGACAGTGTCCCGGGCCTGGAGT
GACCCATCTGGCAGCTCTCCTGGATATCAGCAATGAGACCGCCAGGTCCTTGGGGTCTGC
CTTTTGCCTGGACCACGGGGACAAGAGGCCCGAGGGCCTCTCCCAGGCTGTGGCAGTCGT
CCTGGGCAGCCATCGTGGAAGCAATAAAGCTTTTCCCTGAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               119-277, - strand, RNAz p=0.997271
               

               
               582-700, - strand, RNAz p=0.792183

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-277, - strand, RNAz p=0.997271
               

               
               582-700, - strand, RNAz p=0.792183

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-700, gnl|bosTau2|chr3 (71026586-71025905)
               

               
               2-700, gnl|Hg17|chr1 (44065225-44065924)
               

               
               2-700, gnl|Mm7|chr4 (117309256-117308598)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-700, gnl|bosTau2|chr3 (71026586-71025905)
               

               
               2-700, gnl|Hg17|chr1 (44065225-44065924)
               

               
               2-700, gnl|Mm7|chr4 (117309256-117308598)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ese (0.126502)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ese (0.126502)

	119-277, - strand, RNAz p=0.997271
	582-700, - strand, RNAz p=0.792183

	2-700, gnl\|bosTau2\|chr3 (71026586-71025905)
	2-700, gnl\|Hg17\|chr1 (44065225-44065924)
	2-700, gnl\|Mm7\|chr4 (117309256-117308598)

	nms (0.213858)
	mas (0.210305)
	fcc (0.197785)
	fbs (0.175346)
	ese (0.126502)