Non-Coding RNA Search

Ss1.1-rfcc14b_k24.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
AGAGTCTGCAGGTTTCCTTTTAATCAAGGCTCTGCTAAAAGTGTTTCCTGGGGCTAAGAG
CCCCCAAAGCATGAAATGGACATGTAACACCACCTGGATCCCACAAAGCAGGCCAGACCA
CTCTGGCAAGCACTGCTGGCCTGCCCAAATCCGGATAATCAGACTGGGTATTCGCTGGCT
ACATTTCAAAGCTCAGCACTGCCTTCGGCCAGGATGAAGTGGGAGTGAACCCAGCTGCCA
GCAGAGCTGCCACCCCAGGCTGAGAGCCAAATACCAGCCACTGCCAGTGAAGACTGGCCC
CTTTATTGAAAGGGAGTTGTTCAGAGTCCAGCCACCAGCCCCGGGGAGGGAGAGAAGTCA
GGGCGCCCCGCTCGGAGATGGTCAGGGCTCCGCAGCTCCATCGCCAGCATCCTTTGGAAA
GCCACCTCTGGTGGAGACAGCTGGCTGGGAGGGCGCTCCAGGTTTGGCTGAGACGTTCCC
GCCACCAGCCGGCTCCGGGCGCCGGCGGCCCAGCTGCCGCAGCATCTCCTCGCAGGCGGC
GATGGTGTCCAGGAGCTGCCGCTGCCGCTGCTCCACCGCGTCCAGCAGCTGCTGGGCGCG
CTCATCCCGGGGCGGCTGCGGGGGTGGCCTCCCGCCGAGCCCCAGCCCCGCCTTCCCACG
GTCCACGCCGGCAGCCTCCCCCCGTCCTTCAATCCTGCCCGGGCCCCATTCCATCTCCGC
CTGCGCGGCCCGGAGGTGGGGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
AGAGTCTGCAGGTTTCCTTTTAATCAAGGCTCTGCTAAAAGTGTTTCCTGGGGCTAAGAG
CCCCCAAAGCATGAAATGGACATGTAACACCACCTGGATCCCACAAAGCAGGCCAGACCA
CTCTGGCAAGCACTGCTGGCCTGCCCAAATCCGGATAATCAGACTGGGTATTCGCTGGCT
ACATTTCAAAGCTCAGCACTGCCTTCGGCCAGGATGAAGTGGGAGTGAACCCAGCTGCCA
GCAGAGCTGCCACCCCAGGCTGAGAGCCAAATACCAGCCACTGCCAGTGAAGACTGGCCC
CTTTATTGAAAGGGAGTTGTTCAGAGTCCAGCCACCAGCCCCGGGGAGGGAGAGAAGTCA
GGGCGCCCCGCTCGGAGATGGTCAGGGCTCCGCAGCTCCATCGCCAGCATCCTTTGGAAA
GCCACCTCTGGTGGAGACAGCTGGCTGGGAGGGCGCTCCAGGTTTGGCTGAGACGTTCCC
GCCACCAGCCGGCTCCGGGCGCCGGCGGCCCAGCTGCCGCAGCATCTCCTCGCAGGCGGC
GATGGTGTCCAGGAGCTGCCGCTGCCGCTGCTCCACCGCGTCCAGCAGCTGCTGGGCGCG
CTCATCCCGGGGCGGCTGCGGGGGTGGCCTCCCGCCGAGCCCCAGCCCCGCCTTCCCACG
GTCCACGCCGGCAGCCTCCCCCCGTCCTTCAATCCTGCCCGGGCCCCATTCCATCTCCGC
CTGCGCGGCCCGGAGGTGGGGCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6ZSJ8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ZSJ8_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               60-413, - strand, RNAz p=0.994632
               

               
               212-461, - strand, RNAz p=0.946349

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               60-413, - strand, RNAz p=0.994632
               

               
               212-461, - strand, RNAz p=0.946349

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC016402, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC016402, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               60-538, gnl|bosTau2|chr3 (75289949-75290431)
               

               
               60-538, gnl|canFam2|chr15 (7727937-7727338)
               

               
               60-538, gnl|dasNov1|scaffold_20843 (16241-16841)
               

               
               60-538, gnl|echTel1|scaffold_319920 (828-240)
               

               
               60-538, gnl|hg17|chr1 (37943638-37944237)
               

               
               60-538, gnl|Hg17|chr1 (37944219-37943742)
               

               
               60-538, gnl|loxAfr1|scaffold_7945 (50803-51406)
               

               
               60-538, gnl|mm7|chr4 (124294722-124294120)
               

               
               60-538, gnl|Mm7|chr4 (124294136-124294610)
               

               
               60-538, gnl|panTro1|chr1 (38785707-38786306)
               

               
               60-538, gnl|rheMac2|chr1 (40677958-40678561)
               

               
               60-538, gnl|rn3|chr5 (144192890-144192291)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-538, gnl|bosTau2|chr3 (75289949-75290431)
               

               
               60-538, gnl|canFam2|chr15 (7727937-7727338)
               

               
               60-538, gnl|dasNov1|scaffold_20843 (16241-16841)
               

               
               60-538, gnl|echTel1|scaffold_319920 (828-240)
               

               
               60-538, gnl|hg17|chr1 (37943638-37944237)
               

               
               60-538, gnl|Hg17|chr1 (37944219-37943742)
               

               
               60-538, gnl|loxAfr1|scaffold_7945 (50803-51406)
               

               
               60-538, gnl|mm7|chr4 (124294722-124294120)
               

               
               60-538, gnl|Mm7|chr4 (124294136-124294610)
               

               
               60-538, gnl|panTro1|chr1 (38785707-38786306)
               

               
               60-538, gnl|rheMac2|chr1 (40677958-40678561)
               

               
               60-538, gnl|rn3|chr5 (144192890-144192291)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	60-413, - strand, RNAz p=0.994632
	212-461, - strand, RNAz p=0.946349

	60-538, gnl\|bosTau2\|chr3 (75289949-75290431)
	60-538, gnl\|canFam2\|chr15 (7727937-7727338)
	60-538, gnl\|dasNov1\|scaffold_20843 (16241-16841)
	60-538, gnl\|echTel1\|scaffold_319920 (828-240)
	60-538, gnl\|hg17\|chr1 (37943638-37944237)
	60-538, gnl\|Hg17\|chr1 (37944219-37943742)
	60-538, gnl\|loxAfr1\|scaffold_7945 (50803-51406)
	60-538, gnl\|mm7\|chr4 (124294722-124294120)
	60-538, gnl\|Mm7\|chr4 (124294136-124294610)
	60-538, gnl\|panTro1\|chr1 (38785707-38786306)
	60-538, gnl\|rheMac2\|chr1 (40677958-40678561)
	60-538, gnl\|rn3\|chr5 (144192890-144192291)

	fce (0.271592)
	cov (0.264306)
	ebs (0.236602)
	fcc (0.197785)
	hyp (0.142837)
	nca (0.136874)
	eep (0.122564)
	ecc (0.115035)