Non-Coding RNA Search

Ss1.1-rfcc15b_i14.5

Sequence:


               
               GTATATCACAGACCTTTCCAAATGTTTGTATATGTAATCAGATGTACATTTATATTAAAG
AAAATTGAGATGGACTTAAAGAGCACATCCTGATAAATACTTTCTCTCTTACCTGTACTA
TATTTCTATTAGACTAAAGTTATGTGATTTTTTTTTACATTTTTTCAGATGACTAGCAAT
TTTGATAGTTTGTAAGATAATGCAAAGAACTTTCTCTGACAAACTAACTGCAGTAACAGA
AACCTTTCTTTTCAGTTACTCTTTTTCAAGAATGAAAGCTTATTATACAAAAAAAATTGT
ATACTACTTGATGGAAACAACTTTGTACATCTTGGCCATGTCACTGGTCATTGCGTGAAA
TAAAGATAATAATGACTATTAGTCCAATGCTAAGAGACATGATCTTTGCTCATTAAAGAG
CTAAAATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATATCACAGACCTTTCCAAATGTTTGTATATGTAATCAGATGTACATTTATATTAAAG
AAAATTGAGATGGACTTAAAGAGCACATCCTGATAAATACTTTCTCTCTTACCTGTACTA
TATTTCTATTAGACTAAAGTTATGTGATTTTTTTTTACATTTTTTCAGATGACTAGCAAT
TTTGATAGTTTGTAAGATAATGCAAAGAACTTTCTCTGACAAACTAACTGCAGTAACAGA
AACCTTTCTTTTCAGTTACTCTTTTTCAAGAATGAAAGCTTATTATACAAAAAAAATTGT
ATACTACTTGATGGAAACAACTTTGTACATCTTGGCCATGTCACTGGTCATTGCGTGAAA
TAAAGATAATAATGACTATTAGTCCAATGCTAAGAGACATGATCTTTGCTCATTAAAGAG
CTAAAATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               194-430, - strand, RNAz p=0.810906
               

               
               319-430, - strand, RNAz p=0.996551

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-430, - strand, RNAz p=0.810906
               

               
               319-430, - strand, RNAz p=0.996551

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-430, gnl|bosTau2|chr2 (48939664-48940095)
               

               
               1-430, gnl|canFam2|chr34 (41210319-41210790)
               

               
               1-430, gnl|dasNov1|scaffold_943 (26059-25590)
               

               
               1-430, gnl|echTel1|scaffold_310555 (35754-35302)
               

               
               1-430, gnl|galGal2|chr9 (18151739-18151260)
               

               
               1-430, gnl|hg17|chr3 (175483088-175483556)
               

               
               1-430, gnl|Hg17|chr3 (175483153-175483588)
               

               
               1-430, gnl|loxAfr1|scaffold_1513 (91466-90990)
               

               
               1-430, gnl|mm7|chr3 (25246678-25246202)
               

               
               1-430, gnl|Mm7|chr3 (25246609-25246168)
               

               
               1-430, gnl|monDom2|scaffold_28 (33220872-33220394)
               

               
               1-430, gnl|oryCun1|scaffold_103038 (472-4)
               

               
               1-430, gnl|panTro1|chr2 (179123096-179123565)
               

               
               1-430, gnl|rheMac2|chr2 (112645209-112644741)
               

               
               1-430, gnl|rn3|chr2 (111133438-111132966)
               

               
               1-430, gnl|xenTro1|scaffold_3 (886667-886185)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-430, gnl|bosTau2|chr2 (48939664-48940095)
               

               
               1-430, gnl|canFam2|chr34 (41210319-41210790)
               

               
               1-430, gnl|dasNov1|scaffold_943 (26059-25590)
               

               
               1-430, gnl|echTel1|scaffold_310555 (35754-35302)
               

               
               1-430, gnl|galGal2|chr9 (18151739-18151260)
               

               
               1-430, gnl|hg17|chr3 (175483088-175483556)
               

               
               1-430, gnl|Hg17|chr3 (175483153-175483588)
               

               
               1-430, gnl|loxAfr1|scaffold_1513 (91466-90990)
               

               
               1-430, gnl|mm7|chr3 (25246678-25246202)
               

               
               1-430, gnl|Mm7|chr3 (25246609-25246168)
               

               
               1-430, gnl|monDom2|scaffold_28 (33220872-33220394)
               

               
               1-430, gnl|oryCun1|scaffold_103038 (472-4)
               

               
               1-430, gnl|panTro1|chr2 (179123096-179123565)
               

               
               1-430, gnl|rheMac2|chr2 (112645209-112644741)
               

               
               1-430, gnl|rn3|chr2 (111133438-111132966)
               

               
               1-430, gnl|xenTro1|scaffold_3 (886667-886185)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fco (0.157208)

	194-430, - strand, RNAz p=0.810906
	319-430, - strand, RNAz p=0.996551

	1-430, gnl\|bosTau2\|chr2 (48939664-48940095)
	1-430, gnl\|canFam2\|chr34 (41210319-41210790)
	1-430, gnl\|dasNov1\|scaffold_943 (26059-25590)
	1-430, gnl\|echTel1\|scaffold_310555 (35754-35302)
	1-430, gnl\|galGal2\|chr9 (18151739-18151260)
	1-430, gnl\|hg17\|chr3 (175483088-175483556)
	1-430, gnl\|Hg17\|chr3 (175483153-175483588)
	1-430, gnl\|loxAfr1\|scaffold_1513 (91466-90990)
	1-430, gnl\|mm7\|chr3 (25246678-25246202)
	1-430, gnl\|Mm7\|chr3 (25246609-25246168)
	1-430, gnl\|monDom2\|scaffold_28 (33220872-33220394)
	1-430, gnl\|oryCun1\|scaffold_103038 (472-4)
	1-430, gnl\|panTro1\|chr2 (179123096-179123565)
	1-430, gnl\|rheMac2\|chr2 (112645209-112644741)
	1-430, gnl\|rn3\|chr2 (111133438-111132966)
	1-430, gnl\|xenTro1\|scaffold_3 (886667-886185)