Non-Coding RNA Search

Ss1.1-rfcc17b_c4.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTCCTCCCCCGAGAGGAAGAATTGCTTTTCTCATACAAGTATAT
GTGTTTCTGGGATCCTCTTTGTTATGAGCTGCCCTTCTAACCTGAAGGATACCCAGATTT
CTCTTTTGAAAGAACGAGGAGGAAAATACTACCCTCGCCTTCCCCAAAGGGTGGAGTTTA
TGGGCCGAATGTTATATATACAGACACGTGTGAGTTTCTGGGCCTGCAGGAGGCTCCTAC
CTCCTGATGCTGATGCGTATGCTGAGCTGGGCTGGGTATGTGTTGAGTGGTTGAGGACTC
AAGCACTTCGGCCCCAGACTTGAAGTCATTGTGAGACAGTATGATTTTTTAAAAAAATTG
TTTCATCAGGTCCAGAAAAAAACAGTGTCCATTGATTTTGGTGTGTGGTGTGTCAGCAGC
TCACAGCAATGACGCTGGGTGGTTTCCGGACCTGGCCGAGTTGTGGCTTCACGACAGAAC
ACTTATCTTACAGCGAGTGAACAGAGGCAGGGGCAACCGCCAAACCCCCTTACCCAGATG
CACTTTAAAAAGCCACTCATGCTTTGGCTGAAACTGTAATTAATTTATTTTATGTACAAT
AAAGCTCATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTCCTCCCCCGAGAGGAAGAATTGCTTTTCTCATACAAGTATAT
GTGTTTCTGGGATCCTCTTTGTTATGAGCTGCCCTTCTAACCTGAAGGATACCCAGATTT
CTCTTTTGAAAGAACGAGGAGGAAAATACTACCCTCGCCTTCCCCAAAGGGTGGAGTTTA
TGGGCCGAATGTTATATATACAGACACGTGTGAGTTTCTGGGCCTGCAGGAGGCTCCTAC
CTCCTGATGCTGATGCGTATGCTGAGCTGGGCTGGGTATGTGTTGAGTGGTTGAGGACTC
AAGCACTTCGGCCCCAGACTTGAAGTCATTGTGAGACAGTATGATTTTTTAAAAAAATTG
TTTCATCAGGTCCAGAAAAAAACAGTGTCCATTGATTTTGGTGTGTGGTGTGTCAGCAGC
TCACAGCAATGACGCTGGGTGGTTTCCGGACCTGGCCGAGTTGTGGCTTCACGACAGAAC
ACTTATCTTACAGCGAGTGAACAGAGGCAGGGGCAACCGCCAAACCCCCTTACCCAGATG
CACTTTAAAAAGCCACTCATGCTTTGGCTGAAACTGTAATTAATTTATTTTATGTACAAT
AAAGCTCATTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-184, - strand, RNAz p=0.904353

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-184, - strand, RNAz p=0.904353

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-223, gnl|bosTau2|chr6 (37106557-37106785)
               

               
               1-223, gnl|canFam2|chr13 (48516540-48516887)
               

               
               1-223, gnl|dasNov1|scaffold_11612 (44316-43991)
               

               
               1-223, gnl|echTel1|scaffold_212378 (15268-15584)
               

               
               1-223, gnl|hg17|chr4 (53573123-53573474)
               

               
               1-223, gnl|Hg17|chr4 (53573318-53573557)
               

               
               1-223, gnl|loxAfr1|scaffold_3070 (18626-18961)
               

               
               1-223, gnl|mm7|chr5 (73617464-73617705)
               

               
               1-223, gnl|Mm7|chr5 (73617582-73617768)
               

               
               1-223, gnl|monDom2|scaffold_26 (16476459-16476775)
               

               
               1-223, gnl|oryCun1|scaffold_148192 (10294-10586)
               

               
               1-223, gnl|panTro1|chr3 (93132401-93132049)
               

               
               1-223, gnl|rheMac2|chr5 (76528162-76527818)
               

               
               1-223, gnl|rn3|chr14 (36396104-36395850)
               


               
               266-611, gnl|bosTau2|chr6 (37106805-37107158)
               

               
               266-611, gnl|Hg17|chr4 (53573585-53573922)
               

               
               266-611, gnl|Mm7|chr5 (73617780-73618164)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr6 (37106557-37106785)
               

               
               1-223, gnl|canFam2|chr13 (48516540-48516887)
               

               
               1-223, gnl|dasNov1|scaffold_11612 (44316-43991)
               

               
               1-223, gnl|echTel1|scaffold_212378 (15268-15584)
               

               
               1-223, gnl|hg17|chr4 (53573123-53573474)
               

               
               1-223, gnl|Hg17|chr4 (53573318-53573557)
               

               
               1-223, gnl|loxAfr1|scaffold_3070 (18626-18961)
               

               
               1-223, gnl|mm7|chr5 (73617464-73617705)
               

               
               1-223, gnl|Mm7|chr5 (73617582-73617768)
               

               
               1-223, gnl|monDom2|scaffold_26 (16476459-16476775)
               

               
               1-223, gnl|oryCun1|scaffold_148192 (10294-10586)
               

               
               1-223, gnl|panTro1|chr3 (93132401-93132049)
               

               
               1-223, gnl|rheMac2|chr5 (76528162-76527818)
               

               
               1-223, gnl|rn3|chr14 (36396104-36395850)
               


               
               266-611, gnl|bosTau2|chr6 (37106805-37107158)
               

               
               266-611, gnl|Hg17|chr4 (53573585-53573922)
               

               
               266-611, gnl|Mm7|chr5 (73617780-73618164)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               med (0.116252)

	1-223, gnl\|bosTau2\|chr6 (37106557-37106785)
	1-223, gnl\|canFam2\|chr13 (48516540-48516887)
	1-223, gnl\|dasNov1\|scaffold_11612 (44316-43991)
	1-223, gnl\|echTel1\|scaffold_212378 (15268-15584)
	1-223, gnl\|hg17\|chr4 (53573123-53573474)
	1-223, gnl\|Hg17\|chr4 (53573318-53573557)
	1-223, gnl\|loxAfr1\|scaffold_3070 (18626-18961)
	1-223, gnl\|mm7\|chr5 (73617464-73617705)
	1-223, gnl\|Mm7\|chr5 (73617582-73617768)
	1-223, gnl\|monDom2\|scaffold_26 (16476459-16476775)
	1-223, gnl\|oryCun1\|scaffold_148192 (10294-10586)
	1-223, gnl\|panTro1\|chr3 (93132401-93132049)
	1-223, gnl\|rheMac2\|chr5 (76528162-76527818)
	1-223, gnl\|rn3\|chr14 (36396104-36395850)

	266-611, gnl\|bosTau2\|chr6 (37106805-37107158)
	266-611, gnl\|Hg17\|chr4 (53573585-53573922)
	266-611, gnl\|Mm7\|chr5 (73617780-73618164)

	fcc (0.39557)
	ece (0.229305)
	aor (0.195274)
	nep (0.183925)
	nca (0.136874)
	che (0.136314)
	med (0.116252)