Non-Coding RNA Search

Ss1.1-rfcc17b_e15.5

Sequence:


               
               GACAGTGCCCTCGTCCCGCTGAGTCCCATCCCGTGATTGTCCTGTGTGGCAGGCTCTCAC
TGACCCGCGTCCCCCCACCTCGTAGGAGCAGGCTCTGGAGTCCCACCCCTCCCAGAGGCC
CCCAAGGGTGGGGTTTCTCAGGCTGCCAGGGCAGGCCCAGGCCTCAGGAAGAAGGGGAGG
CCCCCGGCCTCTCCTGGGGTCAGTCCTTGGACACAGGCTCAGCCTCAGGGTGACGAGGAA
AGGTGTGCTCCAGGGCCTGCCTCCCGTGCAGTCTCCAAGGAGCCCAGCTCCCAGGACACG
CTACTAAGTGCCTAGGGCTGGTGGTGTGGCCTGCTCTCTTGAGGGCAACCGACGAGGCTG
TGAGCAGAGGCCCTAAGGGCTAGAACAGGAGCTGCTTTTGGCAGGCACCGCCCTGGACTG
CCAACTCCCCACCTGCCCAGGCCTTACTCCTGTTCCTCGAGGCACCAGTCAGGGCAGCCC
CAGGCCCTGCTGCCCACCCACCTCCCACCAGAGAAGCACAGATCTTGGGCAGCCGTCCCA
CAAGCCCAGCTGGCCACCGCTGCAGCTCCTTGCAGCCACAGGATTCTCCTCACCGCCCTG
CCACTGTCCACTGTGAAGTGTGTCGCGTCCCCTGTCCGTTCTCACAGGGCCAGGGAGGGA
CTGGGGGGAGCCGGGTGGGTACAGCTGGGGAAAGGGGCTGGGTGATGATTCTCCTCAGGC
TTTGGCCCTGCAACTTGAACCTACGTATCTGCTCTGTATGTAATAAATGTCTTAACATCG
TAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGTGCCCTCGTCCCGCTGAGTCCCATCCCGTGATTGTCCTGTGTGGCAGGCTCTCAC
TGACCCGCGTCCCCCCACCTCGTAGGAGCAGGCTCTGGAGTCCCACCCCTCCCAGAGGCC
CCCAAGGGTGGGGTTTCTCAGGCTGCCAGGGCAGGCCCAGGCCTCAGGAAGAAGGGGAGG
CCCCCGGCCTCTCCTGGGGTCAGTCCTTGGACACAGGCTCAGCCTCAGGGTGACGAGGAA
AGGTGTGCTCCAGGGCCTGCCTCCCGTGCAGTCTCCAAGGAGCCCAGCTCCCAGGACACG
CTACTAAGTGCCTAGGGCTGGTGGTGTGGCCTGCTCTCTTGAGGGCAACCGACGAGGCTG
TGAGCAGAGGCCCTAAGGGCTAGAACAGGAGCTGCTTTTGGCAGGCACCGCCCTGGACTG
CCAACTCCCCACCTGCCCAGGCCTTACTCCTGTTCCTCGAGGCACCAGTCAGGGCAGCCC
CAGGCCCTGCTGCCCACCCACCTCCCACCAGAGAAGCACAGATCTTGGGCAGCCGTCCCA
CAAGCCCAGCTGGCCACCGCTGCAGCTCCTTGCAGCCACAGGATTCTCCTCACCGCCCTG
CCACTGTCCACTGTGAAGTGTGTCGCGTCCCCTGTCCGTTCTCACAGGGCCAGGGAGGGA
CTGGGGGGAGCCGGGTGGGTACAGCTGGGGAAAGGGGCTGGGTGATGATTCTCCTCAGGC
TTTGGCCCTGCAACTTGAACCTACGTATCTGCTCTGTATGTAATAAATGTCTTAACATCG
TAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               74-177, - strand, RNAz p=0.769907
               

               
               256-369, - strand, RNAz p=0.555657

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-177, - strand, RNAz p=0.769907
               

               
               256-369, - strand, RNAz p=0.555657

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               74-783, gnl|bosTau2|chr25 (2854989-2854284)
               

               
               74-783, gnl|Hg17|chr16 (1759574-1760320)
               

               
               74-783, gnl|Mm7|chr17 (23081378-23080689)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-783, gnl|bosTau2|chr25 (2854989-2854284)
               

               
               74-783, gnl|Hg17|chr16 (1759574-1760320)
               

               
               74-783, gnl|Mm7|chr17 (23081378-23080689)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.85702)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.85702)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)

	74-177, - strand, RNAz p=0.769907
	256-369, - strand, RNAz p=0.555657

	74-783, gnl\|bosTau2\|chr25 (2854989-2854284)
	74-783, gnl\|Hg17\|chr16 (1759574-1760320)
	74-783, gnl\|Mm7\|chr17 (23081378-23080689)