Ss1.1-rfcc18b_h2.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCACCGGAGCATCTGCATCTCTGACCCGCGTCCCCGCTTGGACATCCCGCGGCCGGCCA TGACGGCGCACTCCTTCGCCCTCCCGGTCATCATCTTCACCACGTTCTGGGGTCTTATCG GCATCGCGGGGCCCTGGTTCGTGCCGAAAGGACCCAACCGCGGAGTGATCATCACCATGC TGGTGGCCACTGCTGTCTGCTGCTACCTCTTCTGGCTCATCACCATCCTGGCTCAGCTGA ACCCCCTGTTCGGGCCCCAGCTGAGGAATGAGACCATCTGGTACGTGCGCTTCCTGTGGG AGTGACTGCTGCCACCTCCTCGGCCCCAGGTGCCCTGGCTCTCTGGATGACCTTGGCTCC ACTGTTCTCCATGACCCTTTATCACCCCCATGGCTGTGTCTGGTCCCTCTGTGCTCTCTC CCCCAAGGCCCATCTGTTTCTGGAAAGTACCACCTTCCCTGGCCAGTCTGGGCCTCGGGA AGCCCCGAGCTCAGAGCCAGGCTGGAGCAGCTGTCCAGCCCTCAAGTCCCCACTGCCCCC TCCCAAGTAGGTCCTGGCCAAGAGCTGACGAGGGCGTGGTCAGCCTTTTACAAATGGGGC AGCCCTAGGAAGGCCTGCATCCTGTGGGGTAGGGGCGTCCAGCCCGGGGTGCTCCGAGCC TGGGGTGGGCCAGGGCCAGGCGGAAGCCCTGGCTGAGGAGTCAGGGGACCAGTTATCGTC AGCCCTGCCCCCGTCCTGCTGCGTGACCCCCGAGCATCAGCCTGTGTGGGCCTTCTCCCC TGTGAGGTGGATGGGCAAAGGCCTTTCTTGGAGTTCTCCTTTAATTTTCTGACACATTTA GATGTGAAATTTCTGAAAATGTTGAAGTAATGGAAAACCATTCACACACAAAAGCGACGT AATAATTTGGATCAAGATTGAAACCCTGGAGTTCCCGCTATGGCGCAAGGGGCTCGACAG CATCTTGGGAGCACTGGGACACAGGTTCGATCCCTGGCTCGGCACAGAGGGTTAAGGATC TGGTGTTGCCGCAGCTGCGTCTTGGGTCTCAATTGTGGCTGAGATCTAATCCCTGGCCCA GGAACTGGGGGGCAGTCGAAAAAAAAAAAAAAGGTGGAAACCTATATGTTTAGCCTTCCT TAGAGTCTCAAAGTCACTCAAACTGACTTGCTCAGCAAGTGCTGTCTCCGTAGAATACCC TGTCCCCCCAACCAGGGCCTCCCTCTGTGGGTAAATCCCGTCCCTTCCCAAGGCTCAGTC TGAGCACCAGGGGAGCAGAAGAAACAGCAGCTCCTGCCCCAGCCTAGATTCTCCTACATT CAGCTGCCTCGGGGGCAGATTTGAGGGCCCCTCAGGACGGAGGTCACCTGGGGCATAGGA GGGTGAAGAGGGACAGGTGTAGGCCAGGTGTGGGTGGCGCTGTGGTGAGGTGTAGGCAAG GTGAGGCCAGTGCCAGACCTATGCCGGGGGTGCTGTGGGGGGTGGGGGGCACCTGGCCTG TCGAGGGCTGGGGCCCCCAGGTGGTGCCCTCACTTCTCAGGGGAGCTGGGGCTGAGACCT CAGATACTTGGCCGTAGTCCCAGAGCTAGTTGGAGTCCCCTGACTTGGCTATGCCACGTT GCCTCCCTGGGGAAAGAAGCCAGTCTCTCGTATTTATTGGCTGTTTATTGGATTGGCGCT CTGTTCAGTGGGCAGTGTTTCTGGAGTGGTGGAGAACGTGCATATGTCTCATCTGTGTTT CTTGGCTCTGGGCTTGGCTTGTTGCTCAGACTGGGCCCTCCTTTTGACAGCCCACCTGCC CCCTTTCAAACTCCCTTCCTGTGCTGACCTCTGTGGCCCTCCTGGAGTGGGGGTTGTGGG GTCTAGATTGTGCTGGAAACCTGACCTGTGTCTAGTGACTTGTGGCTGGTGGGGAAATTA CTGTTTGGTGGCTGCATCCTGGCTGAGGCTAGATTTGCTGGCTGCCGCCCCCGGCCCACC CAATCCCCCTTTCCTTGGAGGGTGGATGTGGGGACAGGAACAGGGACTGACAGCTGCTTG GAGCTGCAGCTCTGGGACGTGGACACGGAGAACTCCATTTTTCTGAGCCTGGAGGAGACA GCGGCTTCCCGGATTCTGCCCAGAACCAGGCCTGGCAGGAGGAGGACAGAGGAAATTTGC CCATCATTTATCTGTGCCCCGGGTGACAGAGTGCATGGCCTCTGGGGGTCTGCAATAAAG CAGGTCCCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCACCGGAGCATCTGCATCTCTGACCCGCGTCCCCGCTTGGACATCCCGCGGCCGGCCA TGACGGCGCACTCCTTCGCCCTCCCGGTCATCATCTTCACCACGTTCTGGGGTCTTATCG GCATCGCGGGGCCCTGGTTCGTGCCGAAAGGACCCAACCGCGGAGTGATCATCACCATGC TGGTGGCCACTGCTGTCTGCTGCTACCTCTTCTGGCTCATCACCATCCTGGCTCAGCTGA ACCCCCTGTTCGGGCCCCAGCTGAGGAATGAGACCATCTGGTACGTGCGCTTCCTGTGGG AGTGACTGCTGCCACCTCCTCGGCCCCAGGTGCCCTGGCTCTCTGGATGACCTTGGCTCC ACTGTTCTCCATGACCCTTTATCACCCCCATGGCTGTGTCTGGTCCCTCTGTGCTCTCTC CCCCAAGGCCCATCTGTTTCTGGAAAGTACCACCTTCCCTGGCCAGTCTGGGCCTCGGGA AGCCCCGAGCTCAGAGCCAGGCTGGAGCAGCTGTCCAGCCCTCAAGTCCCCACTGCCCCC TCCCAAGTAGGTCCTGGCCAAGAGCTGACGAGGGCGTGGTCAGCCTTTTACAAATGGGGC AGCCCTAGGAAGGCCTGCATCCTGTGGGGTAGGGGCGTCCAGCCCGGGGTGCTCCGAGCC TGGGGTGGGCCAGGGCCAGGCGGAAGCCCTGGCTGAGGAGTCAGGGGACCAGTTATCGTC AGCCCTGCCCCCGTCCTGCTGCGTGACCCCCGAGCATCAGCCTGTGTGGGCCTTCTCCCC TGTGAGGTGGATGGGCAAAGGCCTTTCTTGGAGTTCTCCTTTAATTTTCTGACACATTTA GATGTGAAATTTCTGAAAATGTTGAAGTAATGGAAAACCATTCACACACAAAAGCGACGT AATAATTTGGATCAAGATTGAAACCCTGGAGTTCCCGCTATGGCGCAAGGGGCTCGACAG CATCTTGGGAGCACTGGGACACAGGTTCGATCCCTGGCTCGGCACAGAGGGTTAAGGATC TGGTGTTGCCGCAGCTGCGTCTTGGGTCTCAATTGTGGCTGAGATCTAATCCCTGGCCCA GGAACTGGGGGGCAGTCGAAAAAAAAAAAAAAGGTGGAAACCTATATGTTTAGCCTTCCT TAGAGTCTCAAAGTCACTCAAACTGACTTGCTCAGCAAGTGCTGTCTCCGTAGAATACCC TGTCCCCCCAACCAGGGCCTCCCTCTGTGGGTAAATCCCGTCCCTTCCCAAGGCTCAGTC TGAGCACCAGGGGAGCAGAAGAAACAGCAGCTCCTGCCCCAGCCTAGATTCTCCTACATT CAGCTGCCTCGGGGGCAGATTTGAGGGCCCCTCAGGACGGAGGTCACCTGGGGCATAGGA GGGTGAAGAGGGACAGGTGTAGGCCAGGTGTGGGTGGCGCTGTGGTGAGGTGTAGGCAAG GTGAGGCCAGTGCCAGACCTATGCCGGGGGTGCTGTGGGGGGTGGGGGGCACCTGGCCTG TCGAGGGCTGGGGCCCCCAGGTGGTGCCCTCACTTCTCAGGGGAGCTGGGGCTGAGACCT CAGATACTTGGCCGTAGTCCCAGAGCTAGTTGGAGTCCCCTGACTTGGCTATGCCACGTT GCCTCCCTGGGGAAAGAAGCCAGTCTCTCGTATTTATTGGCTGTTTATTGGATTGGCGCT CTGTTCAGTGGGCAGTGTTTCTGGAGTGGTGGAGAACGTGCATATGTCTCATCTGTGTTT CTTGGCTCTGGGCTTGGCTTGTTGCTCAGACTGGGCCCTCCTTTTGACAGCCCACCTGCC CCCTTTCAAACTCCCTTCCTGTGCTGACCTCTGTGGCCCTCCTGGAGTGGGGGTTGTGGG GTCTAGATTGTGCTGGAAACCTGACCTGTGTCTAGTGACTTGTGGCTGGTGGGGAAATTA CTGTTTGGTGGCTGCATCCTGGCTGAGGCTAGATTTGCTGGCTGCCGCCCCCGGCCCACC CAATCCCCCTTTCCTTGGAGGGTGGATGTGGGGACAGGAACAGGGACTGACAGCTGCTTG GAGCTGCAGCTCTGGGACGTGGACACGGAGAACTCCATTTTTCTGAGCCTGGAGGAGACA GCGGCTTCCCGGATTCTGCCCAGAACCAGGCCTGGCAGGAGGAGGACAGAGGAAATTTGC CCATCATTTATCTGTGCCCCGGGTGACAGAGTGCATGGCCTCTGGGGGTCTGCAATAAAG CAGGTCCCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 555-2047, - strand, RNAz p=0.998901 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 555-2047, - strand, RNAz p=0.998901 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 44-163, gnl|bosTau2|chr4 (64999049-64999168) | |
| 44-163, gnl|Hg17|chr7 (149008774-149008906) | |
| 44-163, gnl|Mm7|chr6 (48497785-48497904) | |
| 212-331, gnl|bosTau2|chr4 (65002020-65002136) | |
| 212-331, gnl|canFam2|chr16 (17594548-17594646) | |
| 212-331, gnl|dasNov1|scaffold_143191 (1974-1903) | |
| 212-331, gnl|echTel1|scaffold_207844 (2488-2389) | |
| 212-331, gnl|fr1|chrUn (156993990-156993894) | |
| 212-331, gnl|hg17|chr7 (149013413-149013511) | |
| 212-331, gnl|Hg17|chr7 (149013415-149013529) | |
| 212-331, gnl|loxAfr1|scaffold_24690 (3063-2966) | |
| 212-331, gnl|mm7|chr6 (48500088-48500186) | |
| 212-331, gnl|Mm7|chr6 (48500090-48500218) | |
| 212-331, gnl|oryCun1|scaffold_162848 (901-803) | |
| 212-331, gnl|panTro1|chr6 (151845850-151845948) | |
| 212-331, gnl|rheMac2|chr3 (187178291-187178389) | |
| 212-331, gnl|rn3|chr4 (76900077-76900175) | |
| 212-331, gnl|tetNig1|chrUn_random (90952052-90951956) | |
| 386-668, gnl|bosTau2|chr4 (65002573-65002849) | |
| 386-668, gnl|canFam2|chr16 (17595132-17595880) | |
| 386-668, gnl|dasNov1|scaffold_145580 (4370-3501) | |
| 386-668, gnl|hg17|chr7 (149013933-149014654) | |
| 386-668, gnl|Hg17|chr7 (149014140-149014448) | |
| 386-668, gnl|loxAfr1|scaffold_24690 (2165-1423) | |
| 386-668, gnl|mm7|chr6 (48500374-48501070) | |
| 386-668, gnl|Mm7|chr6 (48500549-48500854) | |
| 386-668, gnl|oryCun1|scaffold_162848 (561-48) | |
| 386-668, gnl|panTro1|chr6 (151846233-151846953) | |
| 386-668, gnl|rheMac2|chr3 (187178723-187179438) | |
| 386-668, gnl|rn3|chr4 (76900404-76901168) | |
| 743-923, gnl|bosTau2|chr4 (65002891-65003073) | |
| 743-923, gnl|canFam2|chr16 (17595132-17595880) | |
| 743-923, gnl|dasNov1|scaffold_145580 (4370-3501) | |
| 743-923, gnl|hg17|chr7 (149013933-149014654) | |
| 743-923, gnl|Hg17|chr7 (149014486-149014662) | |
| 743-923, gnl|loxAfr1|scaffold_24690 (2165-1423) | |
| 743-923, gnl|mm7|chr6 (48500374-48501070) | |
| 743-923, gnl|Mm7|chr6 (48500900-48501070) | |
| 743-923, gnl|oryCun1|scaffold_162848 (561-48) | |
| 743-923, gnl|panTro1|chr6 (151846233-151846953) | |
| 743-923, gnl|rheMac2|chr3 (187178723-187179438) | |
| 743-923, gnl|rn3|chr4 (76900404-76901168) | |
| 1620-2231, gnl|bosTau2|chr4 (65003527-65004142) | |
| 1620-2231, gnl|Hg17|chr7 (149015139-149015752) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-163, gnl|bosTau2|chr4 (64999049-64999168) | |
| 44-163, gnl|Hg17|chr7 (149008774-149008906) | |
| 44-163, gnl|Mm7|chr6 (48497785-48497904) | |
| 212-331, gnl|bosTau2|chr4 (65002020-65002136) | |
| 212-331, gnl|canFam2|chr16 (17594548-17594646) | |
| 212-331, gnl|dasNov1|scaffold_143191 (1974-1903) | |
| 212-331, gnl|echTel1|scaffold_207844 (2488-2389) | |
| 212-331, gnl|fr1|chrUn (156993990-156993894) | |
| 212-331, gnl|hg17|chr7 (149013413-149013511) | |
| 212-331, gnl|Hg17|chr7 (149013415-149013529) | |
| 212-331, gnl|loxAfr1|scaffold_24690 (3063-2966) | |
| 212-331, gnl|mm7|chr6 (48500088-48500186) | |
| 212-331, gnl|Mm7|chr6 (48500090-48500218) | |
| 212-331, gnl|oryCun1|scaffold_162848 (901-803) | |
| 212-331, gnl|panTro1|chr6 (151845850-151845948) | |
| 212-331, gnl|rheMac2|chr3 (187178291-187178389) | |
| 212-331, gnl|rn3|chr4 (76900077-76900175) | |
| 212-331, gnl|tetNig1|chrUn_random (90952052-90951956) | |
| 386-668, gnl|bosTau2|chr4 (65002573-65002849) | |
| 386-668, gnl|canFam2|chr16 (17595132-17595880) | |
| 386-668, gnl|dasNov1|scaffold_145580 (4370-3501) | |
| 386-668, gnl|hg17|chr7 (149013933-149014654) | |
| 386-668, gnl|Hg17|chr7 (149014140-149014448) | |
| 386-668, gnl|loxAfr1|scaffold_24690 (2165-1423) | |
| 386-668, gnl|mm7|chr6 (48500374-48501070) | |
| 386-668, gnl|Mm7|chr6 (48500549-48500854) | |
| 386-668, gnl|oryCun1|scaffold_162848 (561-48) | |
| 386-668, gnl|panTro1|chr6 (151846233-151846953) | |
| 386-668, gnl|rheMac2|chr3 (187178723-187179438) | |
| 386-668, gnl|rn3|chr4 (76900404-76901168) | |
| 743-923, gnl|bosTau2|chr4 (65002891-65003073) | |
| 743-923, gnl|canFam2|chr16 (17595132-17595880) | |
| 743-923, gnl|dasNov1|scaffold_145580 (4370-3501) | |
| 743-923, gnl|hg17|chr7 (149013933-149014654) | |
| 743-923, gnl|Hg17|chr7 (149014486-149014662) | |
| 743-923, gnl|loxAfr1|scaffold_24690 (2165-1423) | |
| 743-923, gnl|mm7|chr6 (48500374-48501070) | |
| 743-923, gnl|Mm7|chr6 (48500900-48501070) | |
| 743-923, gnl|oryCun1|scaffold_162848 (561-48) | |
| 743-923, gnl|panTro1|chr6 (151846233-151846953) | |
| 743-923, gnl|rheMac2|chr3 (187178723-187179438) | |
| 743-923, gnl|rn3|chr4 (76900404-76901168) | |
| 1620-2231, gnl|bosTau2|chr4 (65003527-65004142) | |
| 1620-2231, gnl|Hg17|chr7 (149015139-149015752) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| fhi (0.508733) | |
| nco (0.485201) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| ebs (0.354904) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ese (0.253004) | |
| cje (0.165235) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.508733) | |
| nco (0.485201) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| ebs (0.354904) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ese (0.253004) | |
| cje (0.165235) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |