Non-Coding RNA Search

Ss1.1-rfcc20b_b11.5

Sequence:


               
               AGTGAGAAGACAAAGCCGTCAAAACCCCAGTAGCTTTCTTTTTCTCCAGCCCAGAGCAGA
CACCGGAGCTCCGAGGTACTCCCTCCATCTTTGGAACACGCTCATAATTCATCGATAACA
GGAAGTTATGAGGGACCCTGTGAGTAGCCAGTACAGCTCCTTTCTTTTCTGGAGGATGCC
CATTCCAGAACTGGATCTGTCGGAGCTGGAAGGCCTGGGTCTATCAGATACATCCACCTA
CAAGATCAAGGACAGCAGCGTTGGCAAAATGACGGGGCAAGCAACCGGAGCAGAACAGGA
GAAAAACCCTGAAGGCGATGCCCTCCTTGAGTACAGCACCTTCAACTTTTGGAGAGCTCC
CATTGCCAGCATCCAGTCCTTCGAATTGGACTTGCTCTAAGCCCAAGACCTCTCTCTCCC
ACCACCATGCCCTCATTGCCTGCCTTTCAAACCCCTTCCTTTCCACCCCTTTGCCCTATC
AATCTTGCCTTCTCCCCTCTATTGTGTTGAGGTGGTGCTGATGAATCTGCCAGAGTTGTG
TTTTTATTTATTTATTTATTTATTTATTTATTTAATTTATTTATCTATCTTTCTTATCAT
TTTCTCTCGAAATCCCTCCAAGCCAAAAAGTAAAGGGTTCAAAATAATGGAGTACTGGGT
CACAGGGAATCCTCCTCTTCCCCTAGATATTAATTCCAGAAATCAGGCCCAAAGAGGGCA
CCAGAGAGTCATATAATAGTGCAAGATGGAGGATTGATTTTTTTTTTTTAATTCATTTTG
ATTAGCTTCGAGATTGCTCAAAACTTTCTAATTTCTGGCTCCAGGCCAGTAAACACAAAT
ATTTCTTCAAGGGTTAATGAAATCCCTGCAAGTTTTAATTTGAGATTATCTGCCACAAGA
CTGTAGGATTTCTGAAAGGCGAAGGTGATGACTCCTGCTTTTTTGATCCTGCTCCTTCTT
GTAATACTCTTTTTCTCAGAGAAATTGGAACTAGTTAAAGGTATAAAACAAGAGGAAAAA
AATACATCATGGGAGATGACAATAGAGGAAAGCAATGAATCACTTCAGAAATACTTACCG
CTCTCAAAAGGGTTACAATATATATGCTTCTTCAAGCCTACTCACTTTACAATTTTGCTG
CTGTGGGCTGAAAATTCTAGCTGAGGAAAATCACTGGGATTTCATATCTTAAAATGCAAT
CTTGCTGACTGTTGTGATACTGTGTGGGGTTTTATTCAGTTTCTAAATGGCACAGGGTTT
GGTCCTTAGTATTTTAGTTTTGCTCTCTGGCATTTGCAGTGTAGAATAGTGATCAATGGG
CCTCAGGCATAGTTCTTCAGCCACCTTGAGACCAATAAAATGAACAATCACACTCTGACC
CTACACCTTGTTCCCACTCCTTCCAAAATTACTTCTGGTGATTTGTGTTGCCATTTAATC
ACTTCTTTAATAAAGACATTCAATCCCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAGAAGACAAAGCCGTCAAAACCCCAGTAGCTTTCTTTTTCTCCAGCCCAGAGCAGA
CACCGGAGCTCCGAGGTACTCCCTCCATCTTTGGAACACGCTCATAATTCATCGATAACA
GGAAGTTATGAGGGACCCTGTGAGTAGCCAGTACAGCTCCTTTCTTTTCTGGAGGATGCC
CATTCCAGAACTGGATCTGTCGGAGCTGGAAGGCCTGGGTCTATCAGATACATCCACCTA
CAAGATCAAGGACAGCAGCGTTGGCAAAATGACGGGGCAAGCAACCGGAGCAGAACAGGA
GAAAAACCCTGAAGGCGATGCCCTCCTTGAGTACAGCACCTTCAACTTTTGGAGAGCTCC
CATTGCCAGCATCCAGTCCTTCGAATTGGACTTGCTCTAAGCCCAAGACCTCTCTCTCCC
ACCACCATGCCCTCATTGCCTGCCTTTCAAACCCCTTCCTTTCCACCCCTTTGCCCTATC
AATCTTGCCTTCTCCCCTCTATTGTGTTGAGGTGGTGCTGATGAATCTGCCAGAGTTGTG
TTTTTATTTATTTATTTATTTATTTATTTATTTAATTTATTTATCTATCTTTCTTATCAT
TTTCTCTCGAAATCCCTCCAAGCCAAAAAGTAAAGGGTTCAAAATAATGGAGTACTGGGT
CACAGGGAATCCTCCTCTTCCCCTAGATATTAATTCCAGAAATCAGGCCCAAAGAGGGCA
CCAGAGAGTCATATAATAGTGCAAGATGGAGGATTGATTTTTTTTTTTTAATTCATTTTG
ATTAGCTTCGAGATTGCTCAAAACTTTCTAATTTCTGGCTCCAGGCCAGTAAACACAAAT
ATTTCTTCAAGGGTTAATGAAATCCCTGCAAGTTTTAATTTGAGATTATCTGCCACAAGA
CTGTAGGATTTCTGAAAGGCGAAGGTGATGACTCCTGCTTTTTTGATCCTGCTCCTTCTT
GTAATACTCTTTTTCTCAGAGAAATTGGAACTAGTTAAAGGTATAAAACAAGAGGAAAAA
AATACATCATGGGAGATGACAATAGAGGAAAGCAATGAATCACTTCAGAAATACTTACCG
CTCTCAAAAGGGTTACAATATATATGCTTCTTCAAGCCTACTCACTTTACAATTTTGCTG
CTGTGGGCTGAAAATTCTAGCTGAGGAAAATCACTGGGATTTCATATCTTAAAATGCAAT
CTTGCTGACTGTTGTGATACTGTGTGGGGTTTTATTCAGTTTCTAAATGGCACAGGGTTT
GGTCCTTAGTATTTTAGTTTTGCTCTCTGGCATTTGCAGTGTAGAATAGTGATCAATGGG
CCTCAGGCATAGTTCTTCAGCCACCTTGAGACCAATAAAATGAACAATCACACTCTGACC
CTACACCTTGTTCCCACTCCTTCCAAAATTACTTCTGGTGATTTGTGTTGCCATTTAATC
ACTTCTTTAATAAAGACATTCAATCCCAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               AF1Q_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               AF1Q_PONPY

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-122, gnl|bosTau2|chr3 (16511241-16511120)
               

               
               1-122, gnl|Hg17|chr1 (147845981-147846103)
               

               
               1-122, gnl|Mm7|chr3 (95102166-95102032)
               


               
               567-1468, gnl|bosTau2|chr3 (16506944-16506096)
               

               
               567-1468, gnl|Hg17|chr1 (147853184-147854043)
               

               
               567-1468, gnl|Mm7|chr3 (95093993-95093085)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-122, gnl|bosTau2|chr3 (16511241-16511120)
               

               
               1-122, gnl|Hg17|chr1 (147845981-147846103)
               

               
               1-122, gnl|Mm7|chr3 (95102166-95102032)
               


               
               567-1468, gnl|bosTau2|chr3 (16506944-16506096)
               

               
               567-1468, gnl|Hg17|chr1 (147853184-147854043)
               

               
               567-1468, gnl|Mm7|chr3 (95093993-95093085)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               ecc (1.26539)
               

               
               fhi (1.18704)
               

               
               ece (0.917221)
               

               
               ebs (0.828108)
               

               
               fcc (0.791139)
               

               
               cbe (0.478469)
               

               
               hea (0.408998)
               

               
               cbr (0.383926)
               

               
               sug (0.381874)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ldo (0.194005)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (1.26539)
               

               
               fhi (1.18704)
               

               
               ece (0.917221)
               

               
               ebs (0.828108)
               

               
               fcc (0.791139)
               

               
               cbe (0.478469)
               

               
               hea (0.408998)
               

               
               cbr (0.383926)
               

               
               sug (0.381874)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               ldo (0.194005)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pgl (0.118483)

	1-122, gnl\|bosTau2\|chr3 (16511241-16511120)
	1-122, gnl\|Hg17\|chr1 (147845981-147846103)
	1-122, gnl\|Mm7\|chr3 (95102166-95102032)

	567-1468, gnl\|bosTau2\|chr3 (16506944-16506096)
	567-1468, gnl\|Hg17\|chr1 (147853184-147854043)
	567-1468, gnl\|Mm7\|chr3 (95093993-95093085)

	ecc (1.26539)
	fhi (1.18704)
	ece (0.917221)
	ebs (0.828108)
	fcc (0.791139)
	cbe (0.478469)
	hea (0.408998)
	cbr (0.383926)
	sug (0.381874)
	fbs (0.350693)
	spc (0.340097)
	hyp (0.285673)
	fce (0.271592)
	cov (0.264306)
	ldo (0.194005)
	fco (0.157208)
	tbr (0.154178)
	ssp (0.13552)
	ste (0.135208)
	pgl (0.118483)