Non-Coding RNA Search

Ss1.1-rfcc20b_h23.5

Sequence:


               
               ACATGATTTTCACAAAGAATCTATATATTTTTGCCCTACAGAGAATTGTTCTACAGGTCA
CATGTGTTTTCCCGACATTCCTATGCAGTTACCGTATGTTGAATTTAGTGGTTTAACACT
AAGAAGAAAACTTTAAGGAGTCATTTGACGAATCGGATTGGGGATGGGGTAATTATGATG
ACTTGGTTTTAAAATTTGACGAGTCGCATTTACCTTGATACAATTGGCTTAAATCGGCCT
GTGTGCTTTGGTTCTTCCTATCCATAGACATGGAAATGATTCGGGAGAAGGTATACTTGT
TCCCAAAGGAAAAAATTGGTAAGTCGAGGCAACTGTTACTGTTTGAAGCCCAAATAAGAC
ACGTTCAGGTCACTGGGATCTAAATGTTGTCCAGTTAAGGAAAGCGGGAAAGTGTCCATT
ATAGGCTATATGACCCGCCACCCTAATGTGGAAGATCTGAAGAACCAGGAAGGTGGAAAG
GGCCCTTGACCTTCCTCTGCTGCTGGCATGTGTCGGTCCGGCGTCAGTTCTCCAGGAACG
TGCATACACCTTTGATGAGTTCCTTCCACGTGAAGGGGAAAATGCAGACGGTGGGATACG
CATCCGAGTTGTCCTGAAATCAGCTCAGTTGTGTTTTCTGGGGATTTGATAAGATAGGCC
ATTCCCGTGGGGAAATGACTTCAGTTGCTCTGTTGTCCATGATTCTGATTCTAAACCAGT
GGTGCTATCTTCTCCCTCACTATGGCTGTCTTAGAGTTTGTCTTGCAGTATCACACCCTG
TACACTGATTCTGTGGGTTGCTCCTGACACGTTGCACGTGAACTCTGGCTGATGTTGCTG
CTGCGGGTACATCAGGTACATGGTACGGGGCTCATGTCATAGCCCAAAAGTGACAGCCCA
GTGGACTTGTCATCCTTCCTTGAATGTGGTTGAAGACATAACTGGCTCAGAACGTAAGGA
AGATGGCCCCATGGGATGAGGGAAAGTGAGGGAAACAAAGTCAAGATTTGCAGCTGCCAC
CCATGTTATCATTGGCAGAATTCTGCTGTTTAAGAAGCACTGTGTGGTGAGCTCAGAACC
ACCGTATCCTATCCCAGGAAGACAGTGAAATTTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGATTTTCACAAAGAATCTATATATTTTTGCCCTACAGAGAATTGTTCTACAGGTCA
CATGTGTTTTCCCGACATTCCTATGCAGTTACCGTATGTTGAATTTAGTGGTTTAACACT
AAGAAGAAAACTTTAAGGAGTCATTTGACGAATCGGATTGGGGATGGGGTAATTATGATG
ACTTGGTTTTAAAATTTGACGAGTCGCATTTACCTTGATACAATTGGCTTAAATCGGCCT
GTGTGCTTTGGTTCTTCCTATCCATAGACATGGAAATGATTCGGGAGAAGGTATACTTGT
TCCCAAAGGAAAAAATTGGTAAGTCGAGGCAACTGTTACTGTTTGAAGCCCAAATAAGAC
ACGTTCAGGTCACTGGGATCTAAATGTTGTCCAGTTAAGGAAAGCGGGAAAGTGTCCATT
ATAGGCTATATGACCCGCCACCCTAATGTGGAAGATCTGAAGAACCAGGAAGGTGGAAAG
GGCCCTTGACCTTCCTCTGCTGCTGGCATGTGTCGGTCCGGCGTCAGTTCTCCAGGAACG
TGCATACACCTTTGATGAGTTCCTTCCACGTGAAGGGGAAAATGCAGACGGTGGGATACG
CATCCGAGTTGTCCTGAAATCAGCTCAGTTGTGTTTTCTGGGGATTTGATAAGATAGGCC
ATTCCCGTGGGGAAATGACTTCAGTTGCTCTGTTGTCCATGATTCTGATTCTAAACCAGT
GGTGCTATCTTCTCCCTCACTATGGCTGTCTTAGAGTTTGTCTTGCAGTATCACACCCTG
TACACTGATTCTGTGGGTTGCTCCTGACACGTTGCACGTGAACTCTGGCTGATGTTGCTG
CTGCGGGTACATCAGGTACATGGTACGGGGCTCATGTCATAGCCCAAAAGTGACAGCCCA
GTGGACTTGTCATCCTTCCTTGAATGTGGTTGAAGACATAACTGGCTCAGAACGTAAGGA
AGATGGCCCCATGGGATGAGGGAAAGTGAGGGAAACAAAGTCAAGATTTGCAGCTGCCAC
CCATGTTATCATTGGCAGAATTCTGCTGTTTAAGAAGCACTGTGTGGTGAGCTCAGAACC
ACCGTATCCTATCCCAGGAAGACAGTGAAATTTCCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1116, gnl|bosTau2|chr3 (59228665-59227585)
               

               
               1-1116, gnl|Hg17|chr1 (57174138-57173030)
               

               
               1-1116, gnl|Mm7|chr4 (104119687-104120751)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1116, gnl|bosTau2|chr3 (59228665-59227585)
               

               
               1-1116, gnl|Hg17|chr1 (57174138-57173030)
               

               
               1-1116, gnl|Mm7|chr4 (104119687-104120751)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)

	1-1116, gnl\|bosTau2\|chr3 (59228665-59227585)
	1-1116, gnl\|Hg17\|chr1 (57174138-57173030)
	1-1116, gnl\|Mm7\|chr4 (104119687-104120751)