Ss1.1-rfcc22b_p21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTCGTTGAGCTTGCGAGAGGCTGGCATTAAAAATTGAGGTTCGTTCTTCCCAACTCAA GAATGGTGACGGTGAGGCCTGCAGATCCAGGAGAAACAGCAAAATTAGCGTCTTTCTAGA AAAGTGTTGCCTCGCCCTGGGAACCTCAGGCCTGAGCGTGGGGGAAGAGGATGGAGTTAG ATGAACTGTCACAGTGACTTCTGTTGGGAACCCTAGTTCCTTGGTTGGGGCGCGCGATCC TCCACGCAGCATGGAAGTGTGTCCTTACTGTAAGAAGCCGTTTAAGCGCTTGAAGTCCCA CTTGCCGCACTGTAAGATGCTACGACCACCTGTGCCTGCTGATCAGGATGTTTGTCAGTC CAAGCCGGCTGCACTCCCACATGCTAAGAAAGTCAAAGGACCTGGTCAGAGACCCAATTA AAGCTAGAGAGAGAGAGTTAGGGACAGACCACGAAAAAAGAAATCCTGGCCTGAAAGGGG ACAAGTCAGAGCGGACAGGTAAGTCCTCTCTGCTGCTAGCCATTGATTTGAAAAAAAGCA AGTAGCGCATAGGCTGATAAAGACATCATGGATCAAGTTCAGCCCTCCCTCTAGATGTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTCGTTGAGCTTGCGAGAGGCTGGCATTAAAAATTGAGGTTCGTTCTTCCCAACTCAA GAATGGTGACGGTGAGGCCTGCAGATCCAGGAGAAACAGCAAAATTAGCGTCTTTCTAGA AAAGTGTTGCCTCGCCCTGGGAACCTCAGGCCTGAGCGTGGGGGAAGAGGATGGAGTTAG ATGAACTGTCACAGTGACTTCTGTTGGGAACCCTAGTTCCTTGGTTGGGGCGCGCGATCC TCCACGCAGCATGGAAGTGTGTCCTTACTGTAAGAAGCCGTTTAAGCGCTTGAAGTCCCA CTTGCCGCACTGTAAGATGCTACGACCACCTGTGCCTGCTGATCAGGATGTTTGTCAGTC CAAGCCGGCTGCACTCCCACATGCTAAGAAAGTCAAAGGACCTGGTCAGAGACCCAATTA AAGCTAGAGAGAGAGAGTTAGGGACAGACCACGAAAAAAGAAATCCTGGCCTGAAAGGGG ACAAGTCAGAGCGGACAGGTAAGTCCTCTCTGCTGCTAGCCATTGATTTGAAAAAAAGCA AGTAGCGCATAGGCTGATAAAGACATCATGGATCAAGTTCAGCCCTCCCTCTAGATGTTA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 416-559, - strand, RNAz p=0.939148 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 416-559, - strand, RNAz p=0.939148 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 129-228, gnl|bosTau2|chr19 (52632627-52632527) | |
| 129-228, gnl|canFam2|chr9 (9941128-9941047) | |
| 129-228, gnl|dasNov1|scaffold_914 (48478-48397) | |
| 129-228, gnl|echTel1|scaffold_278105 (44148-44083) | |
| 129-228, gnl|hg17|chr17 (68749880-68749960) | |
| 129-228, gnl|Hg17|chr17 (68749890-68749989) | |
| 129-228, gnl|loxAfr1|scaffold_5739 (25139-25059) | |
| 129-228, gnl|mm7|chr11 (113800677-113800756) | |
| 129-228, gnl|Mm7|chr11 (113800687-113800785) | |
| 129-228, gnl|oryCun1|scaffold_205543 (4966-4887) | |
| 129-228, gnl|panTro1|chr19 (72124274-72124354) | |
| 129-228, gnl|rheMac2|chr16 (68497989-68498069) | |
| 129-228, gnl|rn3|chr10 (103334150-103334227) | |
| 241-600, gnl|bosTau2|chr19 (52637707-52637350) | |
| 241-600, gnl|canFam2|chr9 (9947007-9946589) | |
| 241-600, gnl|canFam2|chr9 (9946588-9946967) | |
| 241-600, gnl|echTel1|scaffold_49758 (4133-3698) | |
| 241-600, gnl|echTel1|scaffold_49758 (3697-4094) | |
| 241-600, gnl|hg17|chr17 (68743172-68743613) | |
| 241-600, gnl|Hg17|chr17 (68743228-68743585) | |
| 241-600, gnl|hg17|chr2 (162251819-162252212) | |
| 241-600, gnl|loxAfr1|scaffold_5739 (30340-29904) | |
| 241-600, gnl|loxAfr1|scaffold_5739 (29903-30300) | |
| 241-600, gnl|mm7|chr11 (113796781-113797216) | |
| 241-600, gnl|mm7|chr11 (113797217-113796820) | |
| 241-600, gnl|Mm7|chr11 (113796837-113797188) | |
| 241-600, gnl|monDom2|scaffold_18 (29423283-29423713) | |
| 241-600, gnl|monDom2|scaffold_18 (29423714-29423330) | |
| 241-600, gnl|oryCun1|scaffold_97629 (514-76) | |
| 241-600, gnl|oryCun1|scaffold_97629 (75-475) | |
| 241-600, gnl|panTro1|chr13 (51632005-51632398) | |
| 241-600, gnl|panTro1|chr19 (72117571-72118012) | |
| 241-600, gnl|rheMac2|chr12 (25103233-25103635) | |
| 241-600, gnl|rheMac2|chr16 (68490979-68491420) | |
| 241-600, gnl|rn3|chr10 (103329894-103330326) | |
| 241-600, gnl|rn3|chr10 (103330327-103329933) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-228, gnl|bosTau2|chr19 (52632627-52632527) | |
| 129-228, gnl|canFam2|chr9 (9941128-9941047) | |
| 129-228, gnl|dasNov1|scaffold_914 (48478-48397) | |
| 129-228, gnl|echTel1|scaffold_278105 (44148-44083) | |
| 129-228, gnl|hg17|chr17 (68749880-68749960) | |
| 129-228, gnl|Hg17|chr17 (68749890-68749989) | |
| 129-228, gnl|loxAfr1|scaffold_5739 (25139-25059) | |
| 129-228, gnl|mm7|chr11 (113800677-113800756) | |
| 129-228, gnl|Mm7|chr11 (113800687-113800785) | |
| 129-228, gnl|oryCun1|scaffold_205543 (4966-4887) | |
| 129-228, gnl|panTro1|chr19 (72124274-72124354) | |
| 129-228, gnl|rheMac2|chr16 (68497989-68498069) | |
| 129-228, gnl|rn3|chr10 (103334150-103334227) | |
| 241-600, gnl|bosTau2|chr19 (52637707-52637350) | |
| 241-600, gnl|canFam2|chr9 (9947007-9946589) | |
| 241-600, gnl|canFam2|chr9 (9946588-9946967) | |
| 241-600, gnl|echTel1|scaffold_49758 (4133-3698) | |
| 241-600, gnl|echTel1|scaffold_49758 (3697-4094) | |
| 241-600, gnl|hg17|chr17 (68743172-68743613) | |
| 241-600, gnl|Hg17|chr17 (68743228-68743585) | |
| 241-600, gnl|hg17|chr2 (162251819-162252212) | |
| 241-600, gnl|loxAfr1|scaffold_5739 (30340-29904) | |
| 241-600, gnl|loxAfr1|scaffold_5739 (29903-30300) | |
| 241-600, gnl|mm7|chr11 (113796781-113797216) | |
| 241-600, gnl|mm7|chr11 (113797217-113796820) | |
| 241-600, gnl|Mm7|chr11 (113796837-113797188) | |
| 241-600, gnl|monDom2|scaffold_18 (29423283-29423713) | |
| 241-600, gnl|monDom2|scaffold_18 (29423714-29423330) | |
| 241-600, gnl|oryCun1|scaffold_97629 (514-76) | |
| 241-600, gnl|oryCun1|scaffold_97629 (75-475) | |
| 241-600, gnl|panTro1|chr13 (51632005-51632398) | |
| 241-600, gnl|panTro1|chr19 (72117571-72118012) | |
| 241-600, gnl|rheMac2|chr12 (25103233-25103635) | |
| 241-600, gnl|rheMac2|chr16 (68490979-68491420) | |
| 241-600, gnl|rn3|chr10 (103329894-103330326) | |
| 241-600, gnl|rn3|chr10 (103330327-103329933) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| jej (0.0989218) |