Non-Coding RNA Search

Ss1.1-rfcc23b_f20.5

Sequence:


               
               GCTGAAATGAGCAAGGTTAGTGGATAGATCATAATTAGCTAGCTCTGATTTCATCAACTA
ACAAGTAACCGTCAGAGGTCTAACCTGTGCTTAGCACTGAGATTTTAACTAATTTAGTTA
ATACTTTGATCACTTATTTTTTCTCATTTAAACTTTATCTTCTCTCAAAAATTGTATTTG
TGCAAGATAACAAGAGAGTAGGATAAAAATAATGATAGTTAACTTTTACAAAGGGCTTAT
TATTAAAGTCTGTAGAATATACCTGGATATCTTCCTGTAGTTCTCTGATCTGTCTTTGTT
TGTATCTGTATTTTTCATCAACAGCTCTTTTTTGTTCTTCTAGTTGGATTTTTAGCTCAT
ACTCATCACCTAGAATTTAAAGACTTTTTACTTAAAATTTTGAACATGCTGTATAAAAAG
CAACCTTCAAATCTTACCTAAATTAAACCTTTAACATGTTTTTTCTGGCCATGCCTACGG
------------------------------------------------------------
------------------------------------------------GGACGTTTTTTG
CTGTTAAAGGTTAAATTCCTTATGTCTACTTGTTGAAAAACAGGGCATGAAGTAGCTATT
CTTAATTTGTCAACACAGAGCAGGCAATATGCTGCTCTTTTCTTCAGATTTGAAATTAAT
TCCCTATAGAAGTGTTGTATGTCATGTCTAAAACCAATAATGGAACAACTTAGCACTTAT
TTTAAAAGGAGGGGGCTGATTGATTTTTTCCCAAACTCAATCAAACCATGGTATGTTTTT
GTTTTTCTTATCTCAGTGTTCCTCTTTTTAAATAACTCTACAGCTTTCATTGCCTGTATA
TTCATTAAAAAGTTTTAATAATTCCTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAAATGAGCAAGGTTAGTGGATAGATCATAATTAGCTAGCTCTGATTTCATCAACTA
ACAAGTAACCGTCAGAGGTCTAACCTGTGCTTAGCACTGAGATTTTAACTAATTTAGTTA
ATACTTTGATCACTTATTTTTTCTCATTTAAACTTTATCTTCTCTCAAAAATTGTATTTG
TGCAAGATAACAAGAGAGTAGGATAAAAATAATGATAGTTAACTTTTACAAAGGGCTTAT
TATTAAAGTCTGTAGAATATACCTGGATATCTTCCTGTAGTTCTCTGATCTGTCTTTGTT
TGTATCTGTATTTTTCATCAACAGCTCTTTTTTGTTCTTCTAGTTGGATTTTTAGCTCAT
ACTCATCACCTAGAATTTAAAGACTTTTTACTTAAAATTTTGAACATGCTGTATAAAAAG
CAACCTTCAAATCTTACCTAAATTAAACCTTTAACATGTTTTTTCTGGCCATGCCTACGG
------------------------------------------------------------
------------------------------------------------GGACGTTTTTTG
CTGTTAAAGGTTAAATTCCTTATGTCTACTTGTTGAAAAACAGGGCATGAAGTAGCTATT
CTTAATTTGTCAACACAGAGCAGGCAATATGCTGCTCTTTTCTTCAGATTTGAAATTAAT
TCCCTATAGAAGTGTTGTATGTCATGTCTAAAACCAATAATGGAACAACTTAGCACTTAT
TTTAAAAGGAGGGGGCTGATTGATTTTTTCCCAAACTCAATCAAACCATGGTATGTTTTT
GTTTTTCTTATCTCAGTGTTCCTCTTTTTAAATAACTCTACAGCTTTCATTGCCTGTATA
TTCATTAAAAAGTTTTAATAATTCCTAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               13-461, gnl|bosTau2|chr1 (52566602-52566167)
               

               
               13-461, gnl|Hg17|chr3 (181819477-181819944)
               

               
               13-461, gnl|Mm7|chr3 (33623958-33624360)
               


               
               486-819, gnl|bosTau2|chr1 (52566171-52565820)
               

               
               486-819, gnl|Hg17|chr3 (181819940-181820295)
               

               
               486-819, gnl|Mm7|chr3 (33624358-33624672)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-461, gnl|bosTau2|chr1 (52566602-52566167)
               

               
               13-461, gnl|Hg17|chr3 (181819477-181819944)
               

               
               13-461, gnl|Mm7|chr3 (33623958-33624360)
               


               
               486-819, gnl|bosTau2|chr1 (52566171-52565820)
               

               
               486-819, gnl|Hg17|chr3 (181819940-181820295)
               

               
               486-819, gnl|Mm7|chr3 (33624358-33624672)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               cut (0.169924)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cut (0.169924)

	13-461, gnl\|bosTau2\|chr1 (52566602-52566167)
	13-461, gnl\|Hg17\|chr3 (181819477-181819944)
	13-461, gnl\|Mm7\|chr3 (33623958-33624360)

	486-819, gnl\|bosTau2\|chr1 (52566171-52565820)
	486-819, gnl\|Hg17\|chr3 (181819940-181820295)
	486-819, gnl\|Mm7\|chr3 (33624358-33624672)