Ss1.1-rfcc23b_f3.5.5
|
CCACCAGCTCCAAACCCGCACAGACGGGAGCTGATTCCTGCCCCAGCTCCTCCTTAAGTC
TCATCAGAGCCTGTAGGAGTTTGCCTCTGAAAACCCACTGCTGACAGGAGTGGGAAAGAG
GGCAAAGGGTGTGATTTTTCTTTCTGGTTATCATCTTCTTTGGGGGGTGGTTAGAAGGTG
TGAGGGAGGGAGAAGGGGGTGAAGAGGGCCATCAACTCCTTCCAAGATGCAAGTGTTTTT
AGTTTTTAAATATTTAAGTAATATAAGTATGTATAAATATATATATATATATATGTATCT
CCACCATTTGGCACAAGGCAAAAGACTCACACTAAGTCAACAAAGAAAGGAAAGACAAAG
CCAGATTTTTTTGTTGTTGTTTTTCCAACAACAAGAAACAGTAATTCTCCAAAGAAGGGG
ACGAAACCGCTAGTTCCCTTAAGCACTTGTGACTGCAAAGTCGGTCCCTGCTAAATTCAC
ACCTACCCAATACCGCTGCCCTGTCAGCAGGTGCACTGTTTGCCCGCACAGACCGCCTCG
GGAAATGATGGAACTGTCAACGTTTACCCTGCTGATGGAAGCCACACGTCTGCACAGCCC
ACAGCAGTCATGAGTGGTCTTGGGCTGGCACTCTTAGCTGGCAGGCTAGGGGGGACAGTG
AACATTAACGTACTGTGAATCGTTCCTGATAAGTGAATAAAACCTTGTGACCAGACAATC
AGCTTATTCACTTATCAGGAATCGACTGTTCTGCTAATTCGCTGTTTTTGTTTTTCATCT
CTGTTGTAGTTCACTATTTCTGCTGTGTTCTGTTTTCTCCTCTCATGCTTGGGCAAAATC
ACTGGGAATAGTATCTTCATGTGACCATGAAACGTTTATATCGAGTGAAAATGATATCTT
AATAAAATCTATGCACTTGCTATCAGGAACACAATACTGGATGTGTCTTATATATATTGA
ACTATATAGTACTCGATTTCTTAAATAAAGCTTAAGAAAGGAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCACCAGCTCCAAACCCGCACAGACGGGAGCTGATTCCTGCCCCAGCTCCTCCTTAAGTC
TCATCAGAGCCTGTAGGAGTTTGCCTCTGAAAACCCACTGCTGACAGGAGTGGGAAAGAG
GGCAAAGGGTGTGATTTTTCTTTCTGGTTATCATCTTCTTTGGGGGGTGGTTAGAAGGTG
TGAGGGAGGGAGAAGGGGGTGAAGAGGGCCATCAACTCCTTCCAAGATGCAAGTGTTTTT
AGTTTTTAAATATTTAAGTAATATAAGTATGTATAAATATATATATATATATATGTATCT
CCACCATTTGGCACAAGGCAAAAGACTCACACTAAGTCAACAAAGAAAGGAAAGACAAAG
CCAGATTTTTTTGTTGTTGTTTTTCCAACAACAAGAAACAGTAATTCTCCAAAGAAGGGG
ACGAAACCGCTAGTTCCCTTAAGCACTTGTGACTGCAAAGTCGGTCCCTGCTAAATTCAC
ACCTACCCAATACCGCTGCCCTGTCAGCAGGTGCACTGTTTGCCCGCACAGACCGCCTCG
GGAAATGATGGAACTGTCAACGTTTACCCTGCTGATGGAAGCCACACGTCTGCACAGCCC
ACAGCAGTCATGAGTGGTCTTGGGCTGGCACTCTTAGCTGGCAGGCTAGGGGGGACAGTG
AACATTAACGTACTGTGAATCGTTCCTGATAAGTGAATAAAACCTTGTGACCAGACAATC
AGCTTATTCACTTATCAGGAATCGACTGTTCTGCTAATTCGCTGTTTTTGTTTTTCATCT
CTGTTGTAGTTCACTATTTCTGCTGTGTTCTGTTTTCTCCTCTCATGCTTGGGCAAAATC
ACTGGGAATAGTATCTTCATGTGACCATGAAACGTTTATATCGAGTGAAAATGATATCTT
AATAAAATCTATGCACTTGCTATCAGGAACACAATACTGGATGTGTCTTATATATATTGA
ACTATATAGTACTCGATTTCTTAAATAAAGCTTAAGAAAGGAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
684-832, - strand, RNAmicro p=0.999999 |
|
702-767, + strand, RNAmicro p=0.971295 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
684-832, - strand, RNAmicro p=0.999999 |
|
702-767, + strand, RNAmicro p=0.971295 |
|
630-818, DB298589 BRACE3 Homo sapiens cDNA clone BRACE3004204 3', mRNA
(dbj|DB298589.1|), blast E-value=0, identity=94.71% |
|
630-818, DB359945 HEMBB1 Homo sapiens cDNA clone HEMBB1001976 3', mRNA
(dbj|DB359945.1|), blast E-value=0, identity=94.71% |
|
630-818, UI-E-CQ1-aev-f-19-0-UI.r1 UI-E-CQ1 Homo sapiens cDNA clone
(gb|BM695345.1|), blast E-value=0, identity=94.71% |
|
630-818, UI-CF-FN0-afk-g-23-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone
(gb|CA312352.1|), blast E-value=0, identity=94.71% |
|
630-818, HESC4_24_G02.b1_A037 NIH_MGC_262 Homo sapiens cDNA clone
(gb|CX867816.1|), blast E-value=0, identity=94.71% |
|
630-818, HUM120C10A Clontech human fetal brain polyA+ mRNA (#6535) Homo
(gb|D60616.1|), blast E-value=0, identity=94.71% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
630-818, DB298589 BRACE3 Homo sapiens cDNA clone BRACE3004204 3', mRNA
(dbj|DB298589.1|), blast E-value=0, identity=94.71% |
|
630-818, DB359945 HEMBB1 Homo sapiens cDNA clone HEMBB1001976 3', mRNA
(dbj|DB359945.1|), blast E-value=0, identity=94.71% |
|
630-818, UI-E-CQ1-aev-f-19-0-UI.r1 UI-E-CQ1 Homo sapiens cDNA clone
(gb|BM695345.1|), blast E-value=0, identity=94.71% |
|
630-818, UI-CF-FN0-afk-g-23-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone
(gb|CA312352.1|), blast E-value=0, identity=94.71% |
|
630-818, HESC4_24_G02.b1_A037 NIH_MGC_262 Homo sapiens cDNA clone
(gb|CX867816.1|), blast E-value=0, identity=94.71% |
|
630-818, HUM120C10A Clontech human fetal brain polyA+ mRNA (#6535) Homo
(gb|D60616.1|), blast E-value=0, identity=94.71% |
|
1-273, gnl|bosTau2|chr13 (5636115-5635843) |
|
1-273, gnl|canFam2|chr2 (27844087-27843856) |
|
1-273, gnl|dasNov1|scaffold_28808 (4572-4790) |
|
1-273, gnl|echTel1|scaffold_324151 (104957-105182) |
|
1-273, gnl|hg17|chr10 (11417499-11417714) |
|
1-273, gnl|Hg17|chr10 (11417568-11417808) |
|
1-273, gnl|loxAfr1|scaffold_1017 (9351-9110) |
|
1-273, gnl|mm7|chr2 (6458085-6457868) |
|
1-273, gnl|Mm7|chr2 (6458015-6457778) |
|
1-273, gnl|monDom2|scaffold_30 (9949347-9949600) |
|
1-273, gnl|oryCun1|scaffold_202279 (44192-43960) |
|
1-273, gnl|panTro1|chr8 (11558300-11558515) |
|
1-273, gnl|rheMac2|chr9 (11576474-11576688) |
|
1-273, gnl|rn3|chr17 (83042006-83042230) |
| |
|
285-1002, gnl|bosTau2|chr13 (5635855-5635131) |
|
285-1002, gnl|Hg17|chr10 (11417796-11418521) |
|
285-1002, gnl|Mm7|chr2 (6457779-6457122) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-273, gnl|bosTau2|chr13 (5636115-5635843) |
|
1-273, gnl|canFam2|chr2 (27844087-27843856) |
|
1-273, gnl|dasNov1|scaffold_28808 (4572-4790) |
|
1-273, gnl|echTel1|scaffold_324151 (104957-105182) |
|
1-273, gnl|hg17|chr10 (11417499-11417714) |
|
1-273, gnl|Hg17|chr10 (11417568-11417808) |
|
1-273, gnl|loxAfr1|scaffold_1017 (9351-9110) |
|
1-273, gnl|mm7|chr2 (6458085-6457868) |
|
1-273, gnl|Mm7|chr2 (6458015-6457778) |
|
1-273, gnl|monDom2|scaffold_30 (9949347-9949600) |
|
1-273, gnl|oryCun1|scaffold_202279 (44192-43960) |
|
1-273, gnl|panTro1|chr8 (11558300-11558515) |
|
1-273, gnl|rheMac2|chr9 (11576474-11576688) |
|
1-273, gnl|rn3|chr17 (83042006-83042230) |
| |
|
285-1002, gnl|bosTau2|chr13 (5635855-5635131) |
|
285-1002, gnl|Hg17|chr10 (11417796-11418521) |
|
285-1002, gnl|Mm7|chr2 (6457779-6457122) |
|
fcc (0.39557) |
|
ill (0.351185) |
|
ecc (0.345105) |
|
ova (0.129132) |
|
tra (0.123092) |
|
fcc (0.39557) |
|
ill (0.351185) |
|
ecc (0.345105) |
|
ova (0.129132) |
|
tra (0.123092) |