Non-Coding RNA Search

Ss1.1-rfcc23b_p11.5

Sequence:


               
               TTCCTAAGACACAGGTTGTACCCCTCTACCAAGCAGCAATGGCTCTTAGAGGAAGCTCGG
AGGAAACTCAGATTACTCAGCATCTCTTCCTGCCATAAACGTTCTTTATGTTTCTACATT
GCTGGGTCCTGTTCCTGGTGGATACTTGGCTGCTGCTAAGTCCGCCATACCCATTTCACT
GCTGTTCCAGAGGCACCATGGTGACTTAATAGATAAAAATCCATTGTAGTACAAACAAGT
TAAATCTGTTGTTAACTTTTGAGCATTTCACAAACGACATTGTAAACGTGCGATGTTATG
TTTTAAATCAGACCACAGTGGTCCCCAAATATTATGTACATAATGGCAAATGTCAGTGTA
ACTTTTTGTTACACTGGCAGTTTCATAGGTAACCAAACCTATGCTCCAATGTTAAATTAT
TTGTGTGTATATGTAAAATACACAAGCTTTAAGCTATATGTGTATGACTGTGAAAGATAA
TGCAACCATACCAGTTGTGACCAGTGGATTATAGTTATCTTTGGTGGTGTTAGGTTATGT
AGTTTCAAACTCTGCTGTATTTTCTCTCGGCACATGCCATTCCTTTGCTGACCTTTTTTT
GTCGTGTGACGATGCCATTGTAATCATTTGAGCTCAAAGCACAAGCATATCACCGTTTAA
TGTTACCCACCGAGAGTTCGTGTTAAGTGATGACAAGTTCCCATTTCACCCGCCTTGTTT
TTGCTGCATTAATCAACGCCACCTGGATGAGGAGATGTGCACTGACTCCATTGCTTCCTC
TGGGATACTGCATGAGCCCACCAAATTAGAGCTACTCTTAATAGATAAACGAGCAGTACA
CATAGGTGCATGTTATGAAACATGAATCCCATAGAGCTGTGGAATTTTGCCAAGTGGTAA
GAGTGTGTTTTTTTTTGTTTCTGTTTCCTTCTCTCTTTCTTTTTTTCTTTTTTTTTTTCT
TTCACTATGCAAAGATGGGAAATGCACAGACTTTTCAAAGACCACTGTCTGAAGAACTTT
ACAAACAGTACTTGAACCCTTTCTTTAAAGTCATCCCATCGTATTTGATAACCGTTGTTG
CCCCCGTGGTTAATTTTAACTTTAAATTGTTTCCAGTTTTTTTGAGTGAGCAACCTGTGG
TTTTGTTGGAAGTTAATAAATTCATTCGTATCTTGTTGGCTGTCTATGGATGGAGATTCA
GTAGTCGTTGTATGCAATCTTTAGTCAAGTGTATATTAAAACTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTAAGACACAGGTTGTACCCCTCTACCAAGCAGCAATGGCTCTTAGAGGAAGCTCGG
AGGAAACTCAGATTACTCAGCATCTCTTCCTGCCATAAACGTTCTTTATGTTTCTACATT
GCTGGGTCCTGTTCCTGGTGGATACTTGGCTGCTGCTAAGTCCGCCATACCCATTTCACT
GCTGTTCCAGAGGCACCATGGTGACTTAATAGATAAAAATCCATTGTAGTACAAACAAGT
TAAATCTGTTGTTAACTTTTGAGCATTTCACAAACGACATTGTAAACGTGCGATGTTATG
TTTTAAATCAGACCACAGTGGTCCCCAAATATTATGTACATAATGGCAAATGTCAGTGTA
ACTTTTTGTTACACTGGCAGTTTCATAGGTAACCAAACCTATGCTCCAATGTTAAATTAT
TTGTGTGTATATGTAAAATACACAAGCTTTAAGCTATATGTGTATGACTGTGAAAGATAA
TGCAACCATACCAGTTGTGACCAGTGGATTATAGTTATCTTTGGTGGTGTTAGGTTATGT
AGTTTCAAACTCTGCTGTATTTTCTCTCGGCACATGCCATTCCTTTGCTGACCTTTTTTT
GTCGTGTGACGATGCCATTGTAATCATTTGAGCTCAAAGCACAAGCATATCACCGTTTAA
TGTTACCCACCGAGAGTTCGTGTTAAGTGATGACAAGTTCCCATTTCACCCGCCTTGTTT
TTGCTGCATTAATCAACGCCACCTGGATGAGGAGATGTGCACTGACTCCATTGCTTCCTC
TGGGATACTGCATGAGCCCACCAAATTAGAGCTACTCTTAATAGATAAACGAGCAGTACA
CATAGGTGCATGTTATGAAACATGAATCCCATAGAGCTGTGGAATTTTGCCAAGTGGTAA
GAGTGTGTTTTTTTTTGTTTCTGTTTCCTTCTCTCTTTCTTTTTTTCTTTTTTTTTTTCT
TTCACTATGCAAAGATGGGAAATGCACAGACTTTTCAAAGACCACTGTCTGAAGAACTTT
ACAAACAGTACTTGAACCCTTTCTTTAAAGTCATCCCATCGTATTTGATAACCGTTGTTG
CCCCCGTGGTTAATTTTAACTTTAAATTGTTTCCAGTTTTTTTGAGTGAGCAACCTGTGG
TTTTGTTGGAAGTTAATAAATTCATTCGTATCTTGTTGGCTGTCTATGGATGGAGATTCA
GTAGTCGTTGTATGCAATCTTTAGTCAAGTGTATATTAAAACTTTTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               267-466, + strand, RNAz p=0.986356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-466, + strand, RNAz p=0.986356

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               267-466, ip36c06.b1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CK998822.1|), blast E-value=0, identity=94.5% 
               

               
               267-466, ip36c06.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CN005895.1|), blast E-value=0, identity=94.5% 
               

               
               267-466, LB02020.CR_D10 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV824793.1|), 
blast E-value=0, identity=95% 
               

               
               267-466, LB02029.CR_K19 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV826567.1|), 
blast E-value=0, identity=95% 
               

               
               267-466, LB02618.CR_L14 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV881460.1|), 
blast E-value=0, identity=95% 
               

               
               267-455, nbc18f11.x1 Rabbit trigeminal nerve. Unnormalized (nbc) Oryctolagus 
(gb|EB375177.1|), blast E-value=0, identity=95.77%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               267-466, ip36c06.b1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CK998822.1|), blast E-value=0, identity=94.5% 
               

               
               267-466, ip36c06.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris 
(gb|CN005895.1|), blast E-value=0, identity=94.5% 
               

               
               267-466, LB02020.CR_D10 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV824793.1|), 
blast E-value=0, identity=95% 
               

               
               267-466, LB02029.CR_K19 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb|DV826567.1|), 
blast E-value=0, identity=95% 
               

               
               267-466, LB02618.CR_L14 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV881460.1|), 
blast E-value=0, identity=95% 
               

               
               267-455, nbc18f11.x1 Rabbit trigeminal nerve. Unnormalized (nbc) Oryctolagus 
(gb|EB375177.1|), blast E-value=0, identity=95.77%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-945, gnl|bosTau2|chr2 (55951641-55952573)
               

               
               2-945, gnl|Hg17|chr2 (207310144-207311065)
               

               
               2-945, gnl|Mm7|chr1 (63835527-63836477)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-945, gnl|bosTau2|chr2 (55951641-55952573)
               

               
               2-945, gnl|Hg17|chr2 (207310144-207311065)
               

               
               2-945, gnl|Mm7|chr1 (63835527-63836477)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fco (0.314416)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               eje (0.0988338)

	267-466, ip36c06.b1 Brain - Cerebellum Library (DOGEST8) Canis familiaris (gb\|CK998822.1\|), blast E-value=0, identity=94.5%
	267-466, ip36c06.g1 Brain - Cerebellum Library (DOGEST8) Canis familiaris (gb\|CN005895.1\|), blast E-value=0, identity=94.5%
	267-466, LB02020.CR_D10 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb\|DV824793.1\|), blast E-value=0, identity=95%
	267-466, LB02029.CR_K19 GC_BGC-20 Bos taurus cDNA clone IMAGE (gb\|DV826567.1\|), blast E-value=0, identity=95%
	267-466, LB02618.CR_L14 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb\|DV881460.1\|), blast E-value=0, identity=95%
	267-455, nbc18f11.x1 Rabbit trigeminal nerve. Unnormalized (nbc) Oryctolagus (gb\|EB375177.1\|), blast E-value=0, identity=95.77%

	2-945, gnl\|bosTau2\|chr2 (55951641-55952573)
	2-945, gnl\|Hg17\|chr2 (207310144-207311065)
	2-945, gnl\|Mm7\|chr1 (63835527-63836477)

	fco (0.314416)
	spc (0.226732)
	fcc (0.197785)
	nco (0.161734)
	hyp (0.142837)
	eje (0.0988338)