Non-Coding RNA Search

Ss1.1-rfcc25b_d19.5

Sequence:


               
               GAGCGGCGGCCAGCCAGCACCCGGGCCGGCCGATCCTTGTCCAGAGCCCGGAGCCCCGCG
CGGGGCAGCTCCTGGGGAGGAGCCTCGCCGTCTGGGACGCGTGCCACGCACTGGTACTCC
CGCGGCACAAACTGGGCTGCACGAGAACTCACTGCGTGCCCTGCTTGCTTGGTCGACAAT
GAGTGCCAAATCTGCCATCAGCAAGGAAATTTTTGCACCTCTTGATGAAAGGATGCTGGG
AGCTGTCCAAGTCAAGAGAAGGACAAAGAAAAAGATTCCTTTCTTGGCAACTGGGGGCCA
AGGCGAATATTTAACTTACATCTGCCTGTCAGTGACAAACAAGAAACCCACGCAGGCATC
CATCACGAAGGTCAAACAGTTTGAAGGCTCCACGTCGTTTGTACGGAGATCACAGTGGAT
GCTTGAGCAGCTTCGCCAGGTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGCGGCCAGCCAGCACCCGGGCCGGCCGATCCTTGTCCAGAGCCCGGAGCCCCGCG
CGGGGCAGCTCCTGGGGAGGAGCCTCGCCGTCTGGGACGCGTGCCACGCACTGGTACTCC
CGCGGCACAAACTGGGCTGCACGAGAACTCACTGCGTGCCCTGCTTGCTTGGTCGACAAT
GAGTGCCAAATCTGCCATCAGCAAGGAAATTTTTGCACCTCTTGATGAAAGGATGCTGGG
AGCTGTCCAAGTCAAGAGAAGGACAAAGAAAAAGATTCCTTTCTTGGCAACTGGGGGCCA
AGGCGAATATTTAACTTACATCTGCCTGTCAGTGACAAACAAGAAACCCACGCAGGCATC
CATCACGAAGGTCAAACAGTTTGAAGGCTCCACGTCGTTTGTACGGAGATCACAGTGGAT
GCTTGAGCAGCTTCGCCAGGTTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               182-332, + strand, RNAz p=0.964795

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-332, + strand, RNAz p=0.964795

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AK096957, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK096957, +

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               143-332, gnl|bosTau2|chr21 (23322461-23322650)
               

               
               143-332, gnl|canFam2|chr8 (7810087-7810259)
               

               
               143-332, gnl|danRer3|chrNA (24631763-24631601)
               

               
               143-332, gnl|dasNov1|scaffold_172196 (837-665)
               

               
               143-332, gnl|fr1|chrUn (13319635-13319474)
               

               
               143-332, gnl|galGal2|chr5 (29346143-29346311)
               

               
               143-332, gnl|hg17|chr14 (24513698-24513870)
               

               
               143-332, gnl|Hg17|chr14 (24513900-24513711)
               

               
               143-332, gnl|loxAfr1|scaffold_60796 (12416-12252)
               

               
               143-332, gnl|mm7|chr12 (43029943-43030114)
               

               
               143-332, gnl|Mm7|chr12 (43030144-43029955)
               

               
               143-332, gnl|monDom2|scaffold_8 (28434581-28434409)
               

               
               143-332, gnl|oryCun1|scaffold_209170 (42243-42071)
               

               
               143-332, gnl|panTro1|chr15 (23415204-23415376)
               

               
               143-332, gnl|rheMac2|chr7 (87888338-87888510)
               

               
               143-332, gnl|rn3|chr6 (64430035-64430206)
               

               
               143-332, gnl|tetNig1|chr10 (7973974-7974140)
               

               
               143-332, gnl|xenTro1|scaffold_199 (826344-826505)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-332, gnl|bosTau2|chr21 (23322461-23322650)
               

               
               143-332, gnl|canFam2|chr8 (7810087-7810259)
               

               
               143-332, gnl|danRer3|chrNA (24631763-24631601)
               

               
               143-332, gnl|dasNov1|scaffold_172196 (837-665)
               

               
               143-332, gnl|fr1|chrUn (13319635-13319474)
               

               
               143-332, gnl|galGal2|chr5 (29346143-29346311)
               

               
               143-332, gnl|hg17|chr14 (24513698-24513870)
               

               
               143-332, gnl|Hg17|chr14 (24513900-24513711)
               

               
               143-332, gnl|loxAfr1|scaffold_60796 (12416-12252)
               

               
               143-332, gnl|mm7|chr12 (43029943-43030114)
               

               
               143-332, gnl|Mm7|chr12 (43030144-43029955)
               

               
               143-332, gnl|monDom2|scaffold_8 (28434581-28434409)
               

               
               143-332, gnl|oryCun1|scaffold_209170 (42243-42071)
               

               
               143-332, gnl|panTro1|chr15 (23415204-23415376)
               

               
               143-332, gnl|rheMac2|chr7 (87888338-87888510)
               

               
               143-332, gnl|rn3|chr6 (64430035-64430206)
               

               
               143-332, gnl|tetNig1|chr10 (7973974-7974140)
               

               
               143-332, gnl|xenTro1|scaffold_199 (826344-826505)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	143-332, gnl\|bosTau2\|chr21 (23322461-23322650)
	143-332, gnl\|canFam2\|chr8 (7810087-7810259)
	143-332, gnl\|danRer3\|chrNA (24631763-24631601)
	143-332, gnl\|dasNov1\|scaffold_172196 (837-665)
	143-332, gnl\|fr1\|chrUn (13319635-13319474)
	143-332, gnl\|galGal2\|chr5 (29346143-29346311)
	143-332, gnl\|hg17\|chr14 (24513698-24513870)
	143-332, gnl\|Hg17\|chr14 (24513900-24513711)
	143-332, gnl\|loxAfr1\|scaffold_60796 (12416-12252)
	143-332, gnl\|mm7\|chr12 (43029943-43030114)
	143-332, gnl\|Mm7\|chr12 (43030144-43029955)
	143-332, gnl\|monDom2\|scaffold_8 (28434581-28434409)
	143-332, gnl\|oryCun1\|scaffold_209170 (42243-42071)
	143-332, gnl\|panTro1\|chr15 (23415204-23415376)
	143-332, gnl\|rheMac2\|chr7 (87888338-87888510)
	143-332, gnl\|rn3\|chr6 (64430035-64430206)
	143-332, gnl\|tetNig1\|chr10 (7973974-7974140)
	143-332, gnl\|xenTro1\|scaffold_199 (826344-826505)