Non-Coding RNA Search

Ss1.1-rfcc26b_b10.5

Sequence:


               
               CTCGACACTGCAGCTTAATGTAAAAATCTTGAATAATATTTTGTACCAACATGAATTTCT
ACTGCCCCTAACACTGTGTAGTGACTTCACTGTATATTCTTTTCTACAGATATTTGAGCT
ACCAGGTGAATCAACTGAAAAAGTCAAATTCTGTTAGGAACATCCTATATGATGTTGGTA
GCCTGTAAAAAACAAATGTCTTTTTTTTATACAAACCGGTAACAAGACTTGTTTCCACAA
TTCCTTTTTACATTTTTTGTGCATATAATACCTGTATATTATACTCATATGCTAAAGTGA
CCAGAAAGTGTTATTTAATAGAAACTGCATACCTTTTTTTATGTCTCTATGGACCCTTTG
ACTCTGGGTACACTTACAATAAATTAGCAGTATAATAGACTATTCTTTTCAATTATGAAT
AAAAATGTACATTGAAGTACAAGATGACTACTGTTTTTAATAAGTTTTTCTCCATTCTAG
TGTGTATTTATTCTAGTAAAATCAGGAAAGGCATGAATCTTTTGTCTT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------TTGTANATCTCT
TTATTTCTTTAGATNTCAAGGGGTTAACTGTCTATTTCATACACAAATAAAAGTTACTTC
TCAGGCCATGTGACTATAGGAAACCCCTGTCCTTCACCANGACTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGACACTGCAGCTTAATGTAAAAATCTTGAATAATATTTTGTACCAACATGAATTTCT
ACTGCCCCTAACACTGTGTAGTGACTTCACTGTATATTCTTTTCTACAGATATTTGAGCT
ACCAGGTGAATCAACTGAAAAAGTCAAATTCTGTTAGGAACATCCTATATGATGTTGGTA
GCCTGTAAAAAACAAATGTCTTTTTTTTATACAAACCGGTAACAAGACTTGTTTCCACAA
TTCCTTTTTACATTTTTTGTGCATATAATACCTGTATATTATACTCATATGCTAAAGTGA
CCAGAAAGTGTTATTTAATAGAAACTGCATACCTTTTTTTATGTCTCTATGGACCCTTTG
ACTCTGGGTACACTTACAATAAATTAGCAGTATAATAGACTATTCTTTTCAATTATGAAT
AAAAATGTACATTGAAGTACAAGATGACTACTGTTTTTAATAAGTTTTTCTCCATTCTAG
TGTGTATTTATTCTAGTAAAATCAGGAAAGGCATGAATCTTTTGTCTT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------TTGTANATCTCT
TTATTTCTTTAGATNTCAAGGGGTTAACTGTCTATTTCATACACAAATAAAAGTTACTTC
TCAGGCCATGTGACTATAGGAAACCCCTGTCCTTCACCANGACTTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               110-211, - strand, RNAz p=0.786242

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-211, - strand, RNAz p=0.786242

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-566, gnl|bosTau2|chr14 (16786106-16786669)
               

               
               1-566, gnl|canFam2|chr29 (16120114-16120507)
               

               
               1-566, gnl|dasNov1|scaffold_589 (112792-113189)
               

               
               1-566, gnl|echTel1|scaffold_313406 (42877-42497)
               

               
               1-566, gnl|hg17|chr8 (64059519-64059914)
               

               
               1-566, gnl|Hg17|chr8 (64059571-64060129)
               

               
               1-566, gnl|mm7|chr4 (20001025-20001402)
               

               
               1-566, gnl|Mm7|chr4 (20001072-20001886)
               

               
               1-566, gnl|monDom2|scaffold_4 (99645867-99645425)
               

               
               1-566, gnl|oryCun1|scaffold_195466 (11923-11525)
               

               
               1-566, gnl|panTro1|chr7 (66059098-66059493)
               

               
               1-566, gnl|rheMac2|chr8 (65540344-65540737)
               

               
               1-566, gnl|rn3|chr5 (34755323-34754938)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-566, gnl|bosTau2|chr14 (16786106-16786669)
               

               
               1-566, gnl|canFam2|chr29 (16120114-16120507)
               

               
               1-566, gnl|dasNov1|scaffold_589 (112792-113189)
               

               
               1-566, gnl|echTel1|scaffold_313406 (42877-42497)
               

               
               1-566, gnl|hg17|chr8 (64059519-64059914)
               

               
               1-566, gnl|Hg17|chr8 (64059571-64060129)
               

               
               1-566, gnl|mm7|chr4 (20001025-20001402)
               

               
               1-566, gnl|Mm7|chr4 (20001072-20001886)
               

               
               1-566, gnl|monDom2|scaffold_4 (99645867-99645425)
               

               
               1-566, gnl|oryCun1|scaffold_195466 (11923-11525)
               

               
               1-566, gnl|panTro1|chr7 (66059098-66059493)
               

               
               1-566, gnl|rheMac2|chr8 (65540344-65540737)
               

               
               1-566, gnl|rn3|chr5 (34755323-34754938)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	1-566, gnl\|bosTau2\|chr14 (16786106-16786669)
	1-566, gnl\|canFam2\|chr29 (16120114-16120507)
	1-566, gnl\|dasNov1\|scaffold_589 (112792-113189)
	1-566, gnl\|echTel1\|scaffold_313406 (42877-42497)
	1-566, gnl\|hg17\|chr8 (64059519-64059914)
	1-566, gnl\|Hg17\|chr8 (64059571-64060129)
	1-566, gnl\|mm7\|chr4 (20001025-20001402)
	1-566, gnl\|Mm7\|chr4 (20001072-20001886)
	1-566, gnl\|monDom2\|scaffold_4 (99645867-99645425)
	1-566, gnl\|oryCun1\|scaffold_195466 (11923-11525)
	1-566, gnl\|panTro1\|chr7 (66059098-66059493)
	1-566, gnl\|rheMac2\|chr8 (65540344-65540737)
	1-566, gnl\|rn3\|chr5 (34755323-34754938)