Non-Coding RNA Search

Ss1.1-rfcc27b_e6.5.5

Sequence:


               
               GCGGCCGCTACTACTGCCTCAATGTGCCCCTGCGGGATGGCATCGATGACCAGAGTTACA
AGCACCTCTTCCAGCCAGTCATCAACCAGGTGGTGGACTTCTACCAACCCACGTGCATTG
TGCTCCAGTGCGGAGCCGACTCCCTGGGCTGTGATCGATTGGGCTGCTTCAACCTCAGCA
TTCGAGGTCACGGCGAGTGCGTCGAATACGTCAAGAGCTTCAACATCCCTCTGCTGGTGC
TCGGGGGCGGCGGCTACACGGTCCGGAACGTCGCCCGCTGCTGGACGTATGAGACATCAC
TGCTGGTGGAAGAGGCCATAAGCGAGGAGCTCCCCTATAGTGAATACTTTGAGTACTTTG
CCCCGGACTTCACGCTCCATCCAGACGTCAGCACCCGCATTGAGAATCAGAACTCACGCC
AGTATCTGGACCAGATCCGCCAGACAATCTTTGAAAACCTGAAGATGCTGAACCACGCAC
CCAGCGTCCAGATTCACGACGTGCCCGCAGACCTCCTGACCTACGACAGGACTGACGAGG
CCGACGCCGAGGAGAGGGGCCCCGAGGAGAATTACAGCAGGCCGGAGGCGCCCAATGAGT
TCTATGACGGAGACCATGACAATGACAAGGAAAGCGACGTGGAGATTTAAGACTGACTGG
GCTTGCCGTGTCCCCAGGAATTCCTTTTTTCCTCTTAGTTGGGTGGGAGGGAAAGGTGTG
ACTCCCCTACCCCTGGTCTGGTTACTTTCAGGGCTGTTACCAACACCGGGGGAGGCTTTG
GAGACCACCTCTGGTTCTTGAACCAGCTGTTCCCTTTCTTCTCCCTCCCAAGGCTAGACC
ACGGTACCTGTTAGGGATCGGATGGGGATAAGGATAGACGTCTCTAGGACCTCTCGGGCC
GTGGGCCCTAGAGGCCAGTCCCAGCCCTTCTGGCTTCCTCATTCCTTCTCTGCTTCCCTC
CAACCCAGAGACTTTGGGGATGAAGGAATAGGCAGCAGTACGGTTGCTTCTGACGTCCAC
CTCCCCTGGCTTCTACTGCAAGCCTTGCTTCCAGGTGAAGAGTAAGGGATTTTAGGGGGC
CCTGGCCCCCTAATACTTTAACCCAGATGATGGGAAGTGTGACTTGGAAAGGGGGGAGGA
TGTGAAAATGTCCTGCTCTAACTTTTGGCTTTATGTCCATTTTACCACTGTTTTTATCCA
ATAAACCGAGTTGGTATTTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTACTACTGCCTCAATGTGCCCCTGCGGGATGGCATCGATGACCAGAGTTACA
AGCACCTCTTCCAGCCAGTCATCAACCAGGTGGTGGACTTCTACCAACCCACGTGCATTG
TGCTCCAGTGCGGAGCCGACTCCCTGGGCTGTGATCGATTGGGCTGCTTCAACCTCAGCA
TTCGAGGTCACGGCGAGTGCGTCGAATACGTCAAGAGCTTCAACATCCCTCTGCTGGTGC
TCGGGGGCGGCGGCTACACGGTCCGGAACGTCGCCCGCTGCTGGACGTATGAGACATCAC
TGCTGGTGGAAGAGGCCATAAGCGAGGAGCTCCCCTATAGTGAATACTTTGAGTACTTTG
CCCCGGACTTCACGCTCCATCCAGACGTCAGCACCCGCATTGAGAATCAGAACTCACGCC
AGTATCTGGACCAGATCCGCCAGACAATCTTTGAAAACCTGAAGATGCTGAACCACGCAC
CCAGCGTCCAGATTCACGACGTGCCCGCAGACCTCCTGACCTACGACAGGACTGACGAGG
CCGACGCCGAGGAGAGGGGCCCCGAGGAGAATTACAGCAGGCCGGAGGCGCCCAATGAGT
TCTATGACGGAGACCATGACAATGACAAGGAAAGCGACGTGGAGATTTAAGACTGACTGG
GCTTGCCGTGTCCCCAGGAATTCCTTTTTTCCTCTTAGTTGGGTGGGAGGGAAAGGTGTG
ACTCCCCTACCCCTGGTCTGGTTACTTTCAGGGCTGTTACCAACACCGGGGGAGGCTTTG
GAGACCACCTCTGGTTCTTGAACCAGCTGTTCCCTTTCTTCTCCCTCCCAAGGCTAGACC
ACGGTACCTGTTAGGGATCGGATGGGGATAAGGATAGACGTCTCTAGGACCTCTCGGGCC
GTGGGCCCTAGAGGCCAGTCCCAGCCCTTCTGGCTTCCTCATTCCTTCTCTGCTTCCCTC
CAACCCAGAGACTTTGGGGATGAAGGAATAGGCAGCAGTACGGTTGCTTCTGACGTCCAC
CTCCCCTGGCTTCTACTGCAAGCCTTGCTTCCAGGTGAAGAGTAAGGGATTTTAGGGGGC
CCTGGCCCCCTAATACTTTAACCCAGATGATGGGAAGTGTGACTTGGAAAGGGGGGAGGA
TGTGAAAATGTCCTGCTCTAACTTTTGGCTTTATGTCCATTTTACCACTGTTTTTATCCA
ATAAACCGAGTTGGTATTTTTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61882043|ref|XP_582328.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882043|ref|XP_582328.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               659-816, - strand, RNAz p=0.99988
               

               
               857-975, - strand, RNAz p=0.872256
               

               
               1013-1160, + strand, RNAz p=0.946365

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               659-816, - strand, RNAz p=0.99988
               

               
               857-975, - strand, RNAz p=0.872256
               

               
               1013-1160, + strand, RNAz p=0.946365

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC000614, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC000614, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               579-1224, gnl|bosTau2|chr7 (35455475-35454822)
               

               
               579-1224, gnl|Hg17|chr5 (140981290-140980633)
               

               
               579-1224, gnl|Mm7|chr18 (38313886-38313278)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               579-1224, gnl|bosTau2|chr7 (35455475-35454822)
               

               
               579-1224, gnl|Hg17|chr5 (140981290-140980633)
               

               
               579-1224, gnl|Mm7|chr18 (38313886-38313278)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cga (0.279096)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	659-816, - strand, RNAz p=0.99988
	857-975, - strand, RNAz p=0.872256
	1013-1160, + strand, RNAz p=0.946365

	579-1224, gnl\|bosTau2\|chr7 (35455475-35454822)
	579-1224, gnl\|Hg17\|chr5 (140981290-140980633)
	579-1224, gnl\|Mm7\|chr18 (38313886-38313278)

	cga (0.279096)
	mgp (0.230681)
	hea (0.204499)
	fcc (0.197785)
	col (0.195008)
	ill (0.175593)
	duo (0.172801)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	hyp (0.142837)
	pla (0.133672)
	cov (0.132153)
	eru (0.120048)
	ecc (0.115035)