Non-Coding RNA Search

Ss1.1-rfcc28b_f5.5

Sequence:


               
               TAGCTCTTTTCTGAGGGATCTGGGTATGACCCTCAGTTTGGTTGTGGGAGTTCTTGCTCT
CATGGCAAACTTTTTTTCTTCTTTAACTTTCTTTGGGGGTTGCCCCCATCCATGCCTGGT
CTTCTTGTGAGACCTTCCAAACCTCGTCTCCATTTCTTGAATGTCGAGTACTACAACGTA
ACTGCGCTAGGGTGCTTTATGGTGCTGTTCTTGAAGAGGCCAGCTGGACTGAACCTCCTT
TGTCCCACTGGTTCCTTCAATCTTGCTGTATTTTGTCTTCTATTTGATTTTTTCCCCTCG
GGGTTTGGGGTGGGAGACGCAGGGGTGGCTTTTGTGTTCTCTTTCTTCTGTATGTATGGA
CTGGCTAAAGTCAGTTATCATGGGCAGCTGACTTCATGGTATTGGTTGGCTGACTTTGGT
TAACTATTAAAGACAAACCAACAAATTGTACAGCTGCACACAAACACCTTTGAGTGTGAA
TCTGAATGGCAACTAGAGGCTTACTTTTTGAACTTCAGGTATGTAACTCAAAAGTAAATA
AAAACACTATTTTTTCAGTAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCTCTTTTCTGAGGGATCTGGGTATGACCCTCAGTTTGGTTGTGGGAGTTCTTGCTCT
CATGGCAAACTTTTTTTCTTCTTTAACTTTCTTTGGGGGTTGCCCCCATCCATGCCTGGT
CTTCTTGTGAGACCTTCCAAACCTCGTCTCCATTTCTTGAATGTCGAGTACTACAACGTA
ACTGCGCTAGGGTGCTTTATGGTGCTGTTCTTGAAGAGGCCAGCTGGACTGAACCTCCTT
TGTCCCACTGGTTCCTTCAATCTTGCTGTATTTTGTCTTCTATTTGATTTTTTCCCCTCG
GGGTTTGGGGTGGGAGACGCAGGGGTGGCTTTTGTGTTCTCTTTCTTCTGTATGTATGGA
CTGGCTAAAGTCAGTTATCATGGGCAGCTGACTTCATGGTATTGGTTGGCTGACTTTGGT
TAACTATTAAAGACAAACCAACAAATTGTACAGCTGCACACAAACACCTTTGAGTGTGAA
TCTGAATGGCAACTAGAGGCTTACTTTTTGAACTTCAGGTATGTAACTCAAAAGTAAATA
AAAACACTATTTTTTCAGTAAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               49-205, - strand, RNAz p=0.997481

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               49-205, - strand, RNAz p=0.997481

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-564, gnl|bosTau2|chr29 (27198752-27199301)
               

               
               9-564, gnl|Hg17|chr11 (133273377-133272813)
               

               
               9-564, gnl|Mm7|chr9 (27237823-27238411)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-564, gnl|bosTau2|chr29 (27198752-27199301)
               

               
               9-564, gnl|Hg17|chr11 (133273377-133272813)
               

               
               9-564, gnl|Mm7|chr9 (27237823-27238411)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.791139)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.791139)

	9-564, gnl\|bosTau2\|chr29 (27198752-27199301)
	9-564, gnl\|Hg17\|chr11 (133273377-133272813)
	9-564, gnl\|Mm7\|chr9 (27237823-27238411)