Non-Coding RNA Search

Ss1.1-rfcc29b_a4.5

Sequence:


               
               CTGCAGGAATTCGAATGCGAGGTTCAGAGCCGTCGCTGCTGCCTGCAAATCGACTCCTAG
AGTTTGACCAACCGCGCTCTAGCTCGGCTTCTCTGGCCGCTGCCGAGATGCTGTCCTGCC
GCCTCCAGTGCGCGCTGGCCGCGCTCTCCATCGTCCTGGCTCTGGGCGGTGTCACTGGCG
CGCCCTCGGATCCCCGACTCCGTCAGTTTCTGCAGAAGTCCCTGGCTGCTGCCGCTGGGA
AGCAGGAACTGGCCAAGTACTTCTTGGCGGAGCTGCTCTCTGAACCCAACCAGACAGAGA
ACGATGCCCTGGAGCCTGAAGATTTGTCCCAGGCTGCTGAGCAGGATGAAATGAGGCTGG
AGCTGCAGAGATCAGCTAACTCAAACCCGGCCATGGCACCCCGAGAACGCAAAGCTGGCT
GCAAGAATTTCTTCTGGAAGACTTTCACATCCTGTTAGCTTTATTAATTATTGTTGTCCA
TATAAGACCTCCAATTCCTCTCCTCCAAACCCCATCTCTCCTTCCCCCCCAATCCTCAGT
AAGACCCTTGCATTAGGAATTGAAGACTGTAAATACAAAATAAAATTATGGTGAAATTAT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGGAATTCGAATGCGAGGTTCAGAGCCGTCGCTGCTGCCTGCAAATCGACTCCTAG
AGTTTGACCAACCGCGCTCTAGCTCGGCTTCTCTGGCCGCTGCCGAGATGCTGTCCTGCC
GCCTCCAGTGCGCGCTGGCCGCGCTCTCCATCGTCCTGGCTCTGGGCGGTGTCACTGGCG
CGCCCTCGGATCCCCGACTCCGTCAGTTTCTGCAGAAGTCCCTGGCTGCTGCCGCTGGGA
AGCAGGAACTGGCCAAGTACTTCTTGGCGGAGCTGCTCTCTGAACCCAACCAGACAGAGA
ACGATGCCCTGGAGCCTGAAGATTTGTCCCAGGCTGCTGAGCAGGATGAAATGAGGCTGG
AGCTGCAGAGATCAGCTAACTCAAACCCGGCCATGGCACCCCGAGAACGCAAAGCTGGCT
GCAAGAATTTCTTCTGGAAGACTTTCACATCCTGTTAGCTTTATTAATTATTGTTGTCCA
TATAAGACCTCCAATTCCTCTCCTCCAAACCCCATCTCTCCTTCCCCCCCAATCCTCAGT
AAGACCCTTGCATTAGGAATTGAAGACTGTAAATACAAAATAAAATTATGGTGAAATTAT
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57528038|ref|NP_001009583.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57528038|ref|NP_001009583.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               242-400, - strand, RNAz p=0.722115

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-400, - strand, RNAz p=0.722115

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               242-609, gnl|bosTau2|chr1 (50539801-50540173)
               

               
               242-609, gnl|Hg17|chr3 (188869771-188869399)
               

               
               242-609, gnl|Mm7|chr16 (23548249-23547877)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               242-609, gnl|bosTau2|chr1 (50539801-50540173)
               

               
               242-609, gnl|Hg17|chr3 (188869771-188869399)
               

               
               242-609, gnl|Mm7|chr16 (23548249-23547877)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cbr (1.40773)
               

               
               fcc (0.988924)
               

               
               fhi (0.508733)
               

               
               ill (0.351185)
               

               
               cut (0.339847)
               

               
               cst (0.280073)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.40773)
               

               
               fcc (0.988924)
               

               
               fhi (0.508733)
               

               
               ill (0.351185)
               

               
               cut (0.339847)
               

               
               cst (0.280073)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               eje (0.0988338)

	242-609, gnl\|bosTau2\|chr1 (50539801-50540173)
	242-609, gnl\|Hg17\|chr3 (188869771-188869399)
	242-609, gnl\|Mm7\|chr16 (23548249-23547877)

	cbr (1.40773)
	fcc (0.988924)
	fhi (0.508733)
	ill (0.351185)
	cut (0.339847)
	cst (0.280073)
	ebs (0.236602)
	ecc (0.23007)
	duo (0.172801)
	nco (0.161734)
	eje (0.0988338)