Non-Coding RNA Search

Ss1.1-rfcc29b_i2.5

Sequence:


               
               CCCATGCCTCCTGGAGAGGTGACATCATGCATTCTCATGCTTCTCACCTAAGTCCCCAGG
GGCCAAGGGAGAAGCCCCGTGCCCCCGAAGAGCCCTGTCCGAAGCCTCAAGGGCAGGAGC
TGGTCAGAGCCAATGCGAAGGAAACCTCATCTTTGCGTAGCCCATGCCTCCTGGAGAGGT
GACATCATGCATTCTCATGCTTCTCACCTAAGTCCCGGAGCCAACCTCCCACTTCCTCCC
TGGGGTTGCAGAGGCACGGGGAGAGGGAGGAGGAGACATTTTAGGACACTGGGTGGGGGT
CACCAGACTTTCTCTGCCCTTGGGGCAGTATAGCTGGCATTTGTTTTATAGACTCTCGTC
TTTGGAATTGGGGGGAGGGGGGAGTGTTTCAATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATGCCTCCTGGAGAGGTGACATCATGCATTCTCATGCTTCTCACCTAAGTCCCCAGG
GGCCAAGGGAGAAGCCCCGTGCCCCCGAAGAGCCCTGTCCGAAGCCTCAAGGGCAGGAGC
TGGTCAGAGCCAATGCGAAGGAAACCTCATCTTTGCGTAGCCCATGCCTCCTGGAGAGGT
GACATCATGCATTCTCATGCTTCTCACCTAAGTCCCGGAGCCAACCTCCCACTTCCTCCC
TGGGGTTGCAGAGGCACGGGGAGAGGGAGGAGGAGACATTTTAGGACACTGGGTGGGGGT
CACCAGACTTTCTCTGCCCTTGGGGCAGTATAGCTGGCATTTGTTTTATAGACTCTCGTC
TTTGGAATTGGGGGGAGGGGGGAGTGTTTCAATCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-396, + strand, RNAz p=0.99744

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-396, + strand, RNAz p=0.99744

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               289-366, UMC-bend_0B02-019-g06 Day 16 Uterus from a non-pregnant animal bend 
(gb|CO000689.1|), blast E-value=9e-28, identity=96.15% 
               

               
               289-366, BovGen_02636 normal cattle brain Bos taurus cDNA clone 
(gb|CO874311.1|), blast E-value=9e-28, identity=96.15% 
               

               
               289-366, BovGen_05807 normal cattle brain Bos taurus cDNA clone 
(gb|CO877482.1|), blast E-value=9e-28, identity=96.15% 
               

               
               289-366, 1241931 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN287637.1|), 
blast E-value=9e-28, identity=96.15% 
               

               
               289-366, 1243467 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288827.1|), 
blast E-value=9e-28, identity=96.15% 
               

               
               289-369, JHU099D07L711 Canine cardiovascular system biased cDNA Canis 
(gb|DR105843.1|), blast E-value=1e-29, identity=96.3%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               289-366, UMC-bend_0B02-019-g06 Day 16 Uterus from a non-pregnant animal bend 
(gb|CO000689.1|), blast E-value=9e-28, identity=96.15% 
               

               
               289-366, BovGen_02636 normal cattle brain Bos taurus cDNA clone 
(gb|CO874311.1|), blast E-value=9e-28, identity=96.15% 
               

               
               289-366, BovGen_05807 normal cattle brain Bos taurus cDNA clone 
(gb|CO877482.1|), blast E-value=9e-28, identity=96.15% 
               

               
               289-366, 1241931 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN287637.1|), 
blast E-value=9e-28, identity=96.15% 
               

               
               289-366, 1243467 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288827.1|), 
blast E-value=9e-28, identity=96.15% 
               

               
               289-369, JHU099D07L711 Canine cardiovascular system biased cDNA Canis 
(gb|DR105843.1|), blast E-value=1e-29, identity=96.3%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014470, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014470, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               112-396, gnl|bosTau2|chr5 (26251781-26252065)
               

               
               112-396, gnl|Hg17|chr12 (47537547-47537260)
               

               
               112-396, gnl|Mm7|chr15 (98655470-98655189)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-396, gnl|bosTau2|chr5 (26251781-26252065)
               

               
               112-396, gnl|Hg17|chr12 (47537547-47537260)
               

               
               112-396, gnl|Mm7|chr15 (98655470-98655189)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.39557)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)

	289-366, UMC-bend_0B02-019-g06 Day 16 Uterus from a non-pregnant animal bend (gb\|CO000689.1\|), blast E-value=9e-28, identity=96.15%
	289-366, BovGen_02636 normal cattle brain Bos taurus cDNA clone (gb\|CO874311.1\|), blast E-value=9e-28, identity=96.15%
	289-366, BovGen_05807 normal cattle brain Bos taurus cDNA clone (gb\|CO877482.1\|), blast E-value=9e-28, identity=96.15%
	289-366, 1241931 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN287637.1\|), blast E-value=9e-28, identity=96.15%
	289-366, 1243467 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN288827.1\|), blast E-value=9e-28, identity=96.15%
	289-369, JHU099D07L711 Canine cardiovascular system biased cDNA Canis (gb\|DR105843.1\|), blast E-value=1e-29, identity=96.3%

	112-396, gnl\|bosTau2\|chr5 (26251781-26252065)
	112-396, gnl\|Hg17\|chr12 (47537547-47537260)
	112-396, gnl\|Mm7\|chr15 (98655470-98655189)