Non-Coding RNA Search

Ss1.1-rfcc29b_j22.5

Sequence:


               
               AGGCTAATGAAAAACTGCAGCTGAAAACATTTTTCCTTCTATTAATATATGTCTTTGTAA
CCTGTCAGTTATTTATCATTATTTATGGATTTAGCACTGTACCCATCTACTCTTGCAAAA
AGGGGGAAAGATCTGTTTGTGAGAATAAGGAAGTGCAGCACTGTATTACTTTTTTCTCTT
TGGTATTACATCACTATTTAGAGCTTCAGCATATGCCTTCCACTCAGGTTCCTTACACGG
CTTATGTTCTCTTTTCTGGTTGTATCACAACACAGTAGAAAAAAAACACAGTAAAAGGGT
GTTAACAATAAGACTGCAATCCTACCTATTATCTACTTTACTATGACAGTGAAGTAGTAT
AAACTTAACTAAAGGTGGTATTGTTTTCATTTTATAAAAATCTACTGTAAAATTATGATG
TTCCATGTAAATTTTCATGTGCTGGCATGCTTACAAGTTAATAGTGTTATAGAATGCTCA
GCTCTCAATGAGGGATTCTTTGTGGTGAATTGCATTACATATGTCATCTATCTATTTGCT
GAAAGAATATGGTGTTTAGCAAAACTACCTGCTGAGCAACATAATAAGATTTTTGTACAA
AGTACAAATTACTAATTATTGTATTTTATTTTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTAATGAAAAACTGCAGCTGAAAACATTTTTCCTTCTATTAATATATGTCTTTGTAA
CCTGTCAGTTATTTATCATTATTTATGGATTTAGCACTGTACCCATCTACTCTTGCAAAA
AGGGGGAAAGATCTGTTTGTGAGAATAAGGAAGTGCAGCACTGTATTACTTTTTTCTCTT
TGGTATTACATCACTATTTAGAGCTTCAGCATATGCCTTCCACTCAGGTTCCTTACACGG
CTTATGTTCTCTTTTCTGGTTGTATCACAACACAGTAGAAAAAAAACACAGTAAAAGGGT
GTTAACAATAAGACTGCAATCCTACCTATTATCTACTTTACTATGACAGTGAAGTAGTAT
AAACTTAACTAAAGGTGGTATTGTTTTCATTTTATAAAAATCTACTGTAAAATTATGATG
TTCCATGTAAATTTTCATGTGCTGGCATGCTTACAAGTTAATAGTGTTATAGAATGCTCA
GCTCTCAATGAGGGATTCTTTGTGGTGAATTGCATTACATATGTCATCTATCTATTTGCT
GAAAGAATATGGTGTTTAGCAAAACTACCTGCTGAGCAACATAATAAGATTTTTGTACAA
AGTACAAATTACTAATTATTGTATTTTATTTTTCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               518-636, + strand, RNAz p=0.924564

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               518-636, + strand, RNAz p=0.924564

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-636, gnl|bosTau2|chr1 (21906116-21906713)
               

               
               21-636, gnl|Hg17|chr3 (98962351-98962968)
               

               
               21-636, gnl|Mm7|chr16 (59578584-59577993)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-636, gnl|bosTau2|chr1 (21906116-21906713)
               

               
               21-636, gnl|Hg17|chr3 (98962351-98962968)
               

               
               21-636, gnl|Mm7|chr16 (59578584-59577993)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ret (0.128733)

	21-636, gnl\|bosTau2\|chr1 (21906116-21906713)
	21-636, gnl\|Hg17\|chr3 (98962351-98962968)
	21-636, gnl\|Mm7\|chr16 (59578584-59577993)