Non-Coding RNA Search

Ss1.1-rfcc30b_e24.5

Sequence:


               
               GGAAACTTTACTCCTAAAAAGGGTGCTCACAGATGTCATGTCTGAAAAACTCCACTCTAA
ATGGTTATTATCATCAGGAGTGTTTTATGTATGTTATTTCCATTTTCTAACTTTCGATAT
GAAATAATCAGTTTACTTATAACATGTTACTTTTTACTGTGCTAATATAAACAGGAACAT
AATTTCTAATTCAATTTCAAATAATTTTGTTAGTACTACTAACAAAAGAAAATGAATTCA
GTTTGTTATAGAAAGAGTCCATAAAACATTCACCCAAAGGTAATAAAATATTCACCCTAA
GGTAATGTCAATCATGTAATCATAATTTCTGAAAGCTTTGAGAATCAACAATAAGTTACT
AGCAATTTATCTATTATCACATTTAACTGTGACTTTGGATATTCTTCATTGCCAAAAACG
AACTCATATGAGCAAATGACAGTCTGAGCTCTATAATCAGTGTGTTTCTGCTGTGCAGAA
ATATTAGGAACATATTGTATAAATATCTTTGATAACTAAAACGTTTAATATTTAATGAAA
TTTGTTGTTACTCATTGTTTTAAATCTGTTTTTTTCTTCCAATAAAGATTTAGATAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAACTTTACTCCTAAAAAGGGTGCTCACAGATGTCATGTCTGAAAAACTCCACTCTAA
ATGGTTATTATCATCAGGAGTGTTTTATGTATGTTATTTCCATTTTCTAACTTTCGATAT
GAAATAATCAGTTTACTTATAACATGTTACTTTTTACTGTGCTAATATAAACAGGAACAT
AATTTCTAATTCAATTTCAAATAATTTTGTTAGTACTACTAACAAAAGAAAATGAATTCA
GTTTGTTATAGAAAGAGTCCATAAAACATTCACCCAAAGGTAATAAAATATTCACCCTAA
GGTAATGTCAATCATGTAATCATAATTTCTGAAAGCTTTGAGAATCAACAATAAGTTACT
AGCAATTTATCTATTATCACATTTAACTGTGACTTTGGATATTCTTCATTGCCAAAAACG
AACTCATATGAGCAAATGACAGTCTGAGCTCTATAATCAGTGTGTTTCTGCTGTGCAGAA
ATATTAGGAACATATTGTATAAATATCTTTGATAACTAAAACGTTTAATATTTAATGAAA
TTTGTTGTTACTCATTGTTTTAAATCTGTTTTTTTCTTCCAATAAAGATTTAGATAGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               372-487, - strand, RNAz p=0.57682

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-487, - strand, RNAz p=0.57682

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr3 (49147091-49146499)
               

               
               1-600, gnl|Hg17|chr1 (75380440-75379838)
               

               
               1-600, gnl|Mm7|chr3 (154179605-154180190)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr3 (49147091-49146499)
               

               
               1-600, gnl|Hg17|chr1 (75380440-75379838)
               

               
               1-600, gnl|Mm7|chr3 (154179605-154180190)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	1-600, gnl\|bosTau2\|chr3 (49147091-49146499)
	1-600, gnl\|Hg17\|chr1 (75380440-75379838)
	1-600, gnl\|Mm7\|chr3 (154179605-154180190)