Non-Coding RNA Search

Ss1.1-rfcc30b_j8.5

Sequence:


               
               GACCTTTCTGAGTCGTCGGTTGTGGTTGGGTTGGGGCTGCTGGAGCCGCTAGTCCTGCGC
CGAGATGCTTCAGAGCCTTATCAAGAACGTTTGGATCCCCTTGAAGCCCTACTACACCCA
AGTTTACCAGGAGATTTGGGTAGGAATGGGGTTGATGGGATTCATCGTCTATAAAATCAG
GAGTGCTGATAAAAGAAGTAAAGCCTTGAAAGCTTCCAGTCCTGCTCCTGCTCATGGCCA
CCACTAACCACCTCCGCTCGGATGGGACGTCGGCCTGGCCGCACTGTGGGATCGTGCGTG
GCACGTCACGTCCACTGGTAGCAGTGCTGCTGCCCTGCAGAATAAACCTACCCGTGAGAT
CCACCCTGCCTGCGCCGTGACCCTCCCGCCGGCCAGAGTCCCGCTGAGAAAGCCGGGGGC
GGAGGGGGGAGAGCGCCATGGGCGCAGGCGTGGGGGCGGATCTAGGCACTCGCTCTGGTG
GGCAATAAACATCTGTTCTGCACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTTTCTGAGTCGTCGGTTGTGGTTGGGTTGGGGCTGCTGGAGCCGCTAGTCCTGCGC
CGAGATGCTTCAGAGCCTTATCAAGAACGTTTGGATCCCCTTGAAGCCCTACTACACCCA
AGTTTACCAGGAGATTTGGGTAGGAATGGGGTTGATGGGATTCATCGTCTATAAAATCAG
GAGTGCTGATAAAAGAAGTAAAGCCTTGAAAGCTTCCAGTCCTGCTCCTGCTCATGGCCA
CCACTAACCACCTCCGCTCGGATGGGACGTCGGCCTGGCCGCACTGTGGGATCGTGCGTG
GCACGTCACGTCCACTGGTAGCAGTGCTGCTGCCCTGCAGAATAAACCTACCCGTGAGAT
CCACCCTGCCTGCGCCGTGACCCTCCCGCCGGCCAGAGTCCCGCTGAGAAAGCCGGGGGC
GGAGGGGGGAGAGCGCCATGGGCGCAGGCGTGGGGGCGGATCTAGGCACTCGCTCTGGTG
GGCAATAAACATCTGTTCTGCACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               68MP_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               68MP_BOVIN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               27-159, gnl|bosTau2|chr15 (12154114-12153983)
               

               
               27-159, gnl|Hg17|chr8 (103235913-103236046)
               

               
               27-159, gnl|Mm7|chr12 (112192578-112192701)
               


               
               208-414, gnl|bosTau2|chr21 (48223695-48223895)
               

               
               208-414, gnl|Hg17|chr14 (103448789-103448549)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-159, gnl|bosTau2|chr15 (12154114-12153983)
               

               
               27-159, gnl|Hg17|chr8 (103235913-103236046)
               

               
               27-159, gnl|Mm7|chr12 (112192578-112192701)
               


               
               208-414, gnl|bosTau2|chr21 (48223695-48223895)
               

               
               208-414, gnl|Hg17|chr14 (103448789-103448549)

Expressed library(ies): 44 entry(ies)

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Expressed library(ies): 44 entry(ies)

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               hlv (2.36736)
               

               
               ctl (1.68376)
               

               
               che (1.22683)
               

               
               nep (1.10355)
               

               
               nje (0.99552)
               

               
               jej (0.890296)
               

               
               hyp (0.85702)
               

               
               nco (0.808669)
               

               
               cag (0.755972)
               

               
               ebs (0.709807)
               

               
               ton (0.702001)
               

               
               cst (0.700182)
               

               
               nmm (0.664011)
               

               
               ute (0.663922)
               

               
               mas (0.630915)
               

               
               fbs (0.526039)
               

               
               eye (0.511509)
               

               
               ese (0.506009)
               

               
               cki (0.495704)
               

               
               ece (0.45861)
               

               
               cli (0.458435)
               

               
               nlu (0.383362)
               

               
               eep (0.367692)
               

               
               cly (0.361925)
               

               
               ill (0.351185)
               

               
               ecc (0.345105)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (2.36736)
               

               
               ctl (1.68376)
               

               
               che (1.22683)
               

               
               nep (1.10355)
               

               
               nje (0.99552)
               

               
               jej (0.890296)
               

               
               hyp (0.85702)
               

               
               nco (0.808669)
               

               
               cag (0.755972)
               

               
               ebs (0.709807)
               

               
               ton (0.702001)
               

               
               cst (0.700182)
               

               
               nmm (0.664011)
               

               
               ute (0.663922)
               

               
               mas (0.630915)
               

               
               fbs (0.526039)
               

               
               eye (0.511509)
               

               
               ese (0.506009)
               

               
               cki (0.495704)
               

               
               ece (0.45861)
               

               
               cli (0.458435)
               

               
               nlu (0.383362)
               

               
               eep (0.367692)
               

               
               cly (0.361925)
               

               
               ill (0.351185)
               

               
               ecc (0.345105)
               

               
               fhi (0.339155)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	27-159, gnl\|bosTau2\|chr15 (12154114-12153983)
	27-159, gnl\|Hg17\|chr8 (103235913-103236046)
	27-159, gnl\|Mm7\|chr12 (112192578-112192701)

	208-414, gnl\|bosTau2\|chr21 (48223695-48223895)
	208-414, gnl\|Hg17\|chr14 (103448789-103448549)

	hlv (2.36736)
	ctl (1.68376)
	che (1.22683)
	nep (1.10355)
	nje (0.99552)
	jej (0.890296)
	hyp (0.85702)
	nco (0.808669)
	cag (0.755972)
	ebs (0.709807)
	ton (0.702001)
	cst (0.700182)
	nmm (0.664011)
	ute (0.663922)
	mas (0.630915)
	fbs (0.526039)
	eye (0.511509)
	ese (0.506009)
	cki (0.495704)
	ece (0.45861)
	cli (0.458435)
	nlu (0.383362)
	eep (0.367692)
	cly (0.361925)
	ill (0.351185)
	ecc (0.345105)
	fhi (0.339155)
	csp (0.322373)
	sme (0.305437)
	eje (0.296501)
	pty (0.285429)
	ssp (0.271039)
	cov (0.264306)
	nbm (0.198649)
	fcc (0.197785)
	col (0.195008)
	duo (0.172801)
	cje (0.165235)
	lnt (0.142308)
	nca (0.136874)
	pla (0.133672)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)