Ss1.1-rfcc30b_k19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGGCTCTGTGGGGACGTGACCCTGCCCTGGTGACACCCTTTCTGGCAAAGGCAAAGGC CTGGGCAGCCCTGGATCCAAGCAGCCCTCTGCCAAGTGCCCCTGGCCTGAAGCCACCCCC CTCAGTGGGTCCAGGCCCAGAGCTGCTGCCCCCTTCCTCCTTCACACCATGTGGGGCCAG GGCGCCATCCCAGCCGACAACCTCTGGGCTTTGGCCCCAGGCCCCATCATCCCCGGACAG CACCCCCAACCCCCACCTGCTCCTTCCTGGGAACTTCATGGGCACTTCACAGGCTGGTCC TGGCCCTGACACTGTGGGTGTGTACCTGGGGTCAGTTAGTGCCTCGAGGGTTCAGGCTAC TCCTGGCATCCGGGACCCCTGGGTTCAGCCTGGGCCCAGCCAGGAGGAAGGTCAAGACCA AGCTCAATTTTCTGCTGCCACTGGCCACACCACCCTGGTGGCTGAGCTTGAGGGCATCCA GCAGCAACTGCAGGACTACCAGACCATGAAGCAGAACCTTAGGTCCTGCCAGCGGCAAGC AAGCAGCCTGCGTCGGTGGCTAGAGCTGAGCCGGGAGGAGCCCAGGCCAGAGGACCAGGA AGCAGAGCGGCAGGTGCAGCAAGAGCTGCAGGAGCTGGAAATGCAGATCCAGCAGCTGAG TTCTGAGCTGCAGGCCCAGCGCCAGCCCATTCGTGCCTGCATCGCCCGTGTCCAGGCCCT GCGGCAGACTCTGTGCTAGTCACGGCCCCACATCCAGGAACAGAACGCAAAGCTGCAATG AGTTTTTATTCCAAAATGTTGCAATTAAATGAATCACTGTTCAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGGCTCTGTGGGGACGTGACCCTGCCCTGGTGACACCCTTTCTGGCAAAGGCAAAGGC CTGGGCAGCCCTGGATCCAAGCAGCCCTCTGCCAAGTGCCCCTGGCCTGAAGCCACCCCC CTCAGTGGGTCCAGGCCCAGAGCTGCTGCCCCCTTCCTCCTTCACACCATGTGGGGCCAG GGCGCCATCCCAGCCGACAACCTCTGGGCTTTGGCCCCAGGCCCCATCATCCCCGGACAG CACCCCCAACCCCCACCTGCTCCTTCCTGGGAACTTCATGGGCACTTCACAGGCTGGTCC TGGCCCTGACACTGTGGGTGTGTACCTGGGGTCAGTTAGTGCCTCGAGGGTTCAGGCTAC TCCTGGCATCCGGGACCCCTGGGTTCAGCCTGGGCCCAGCCAGGAGGAAGGTCAAGACCA AGCTCAATTTTCTGCTGCCACTGGCCACACCACCCTGGTGGCTGAGCTTGAGGGCATCCA GCAGCAACTGCAGGACTACCAGACCATGAAGCAGAACCTTAGGTCCTGCCAGCGGCAAGC AAGCAGCCTGCGTCGGTGGCTAGAGCTGAGCCGGGAGGAGCCCAGGCCAGAGGACCAGGA AGCAGAGCGGCAGGTGCAGCAAGAGCTGCAGGAGCTGGAAATGCAGATCCAGCAGCTGAG TTCTGAGCTGCAGGCCCAGCGCCAGCCCATTCGTGCCTGCATCGCCCGTGTCCAGGCCCT GCGGCAGACTCTGTGCTAGTCACGGCCCCACATCCAGGAACAGAACGCAAAGCTGCAATG AGTTTTTATTCCAAAATGTTGCAATTAAATGAATCACTGTTCAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 186-304, + strand, RNAz p=0.99883 | |
| 202-298, - strand, RNAz p=0.708375 | |
| 668-785, - strand, RNAz p=0.961611 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 186-304, + strand, RNAz p=0.99883 | |
| 202-298, - strand, RNAz p=0.708375 | |
| 668-785, - strand, RNAz p=0.961611 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 206-408, - strand, RNAmicro p=0.992831 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK097004, + |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 186-537, gnl|bosTau2|chr17 (43197667-43198005) | |
| 186-537, gnl|canFam2|chr26 (27530981-27531356) | |
| 186-537, gnl|echTel1|scaffold_195490 (5752-5439) | |
| 186-537, gnl|hg17|chr22 (30337248-30337632) | |
| 186-537, gnl|Hg17|chr22 (30337289-30337626) | |
| 186-537, gnl|loxAfr1|scaffold_389 (227500-227888) | |
| 186-537, gnl|mm7|chr11 (3085249-3084878) | |
| 186-537, gnl|Mm7|chr5 (31797836-31798159) | |
| 186-537, gnl|monDom2|scaffold_141 (422500-422899) | |
| 186-537, gnl|oryCun1|scaffold_131590 (680-320) | |
| 186-537, gnl|panTro1|chr23 (30440179-30440563) | |
| 186-537, gnl|rheMac2|chr10 (75508006-75508390) | |
| 186-537, gnl|rn3|chr14 (83752835-83752465) | |
| 633-826, gnl|bosTau2|chr17 (43198634-43198826) | |
| 633-826, gnl|canFam2|chr26 (27531734-27531940) | |
| 633-826, gnl|dasNov1|scaffold_62176 (4162-3925) | |
| 633-826, gnl|echTel1|scaffold_195490 (4891-4669) | |
| 633-826, gnl|hg17|chr22 (30338819-30339046) | |
| 633-826, gnl|Hg17|chr22 (30338852-30339091) | |
| 633-826, gnl|loxAfr1|scaffold_389 (228588-228832) | |
| 633-826, gnl|mm7|chr11 (3084180-3083934) | |
| 633-826, gnl|Mm7|chr5 (31798884-31799108) | |
| 633-826, gnl|monDom2|scaffold_141 (424295-424499) | |
| 633-826, gnl|panTro1|chr23 (30441750-30441976) | |
| 633-826, gnl|rheMac2|chr10 (75509571-75509799) | |
| 633-826, gnl|rn3|chr14 (83751913-83751713) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 186-537, gnl|bosTau2|chr17 (43197667-43198005) | |
| 186-537, gnl|canFam2|chr26 (27530981-27531356) | |
| 186-537, gnl|echTel1|scaffold_195490 (5752-5439) | |
| 186-537, gnl|hg17|chr22 (30337248-30337632) | |
| 186-537, gnl|Hg17|chr22 (30337289-30337626) | |
| 186-537, gnl|loxAfr1|scaffold_389 (227500-227888) | |
| 186-537, gnl|mm7|chr11 (3085249-3084878) | |
| 186-537, gnl|Mm7|chr5 (31797836-31798159) | |
| 186-537, gnl|monDom2|scaffold_141 (422500-422899) | |
| 186-537, gnl|oryCun1|scaffold_131590 (680-320) | |
| 186-537, gnl|panTro1|chr23 (30440179-30440563) | |
| 186-537, gnl|rheMac2|chr10 (75508006-75508390) | |
| 186-537, gnl|rn3|chr14 (83752835-83752465) | |
| 633-826, gnl|bosTau2|chr17 (43198634-43198826) | |
| 633-826, gnl|canFam2|chr26 (27531734-27531940) | |
| 633-826, gnl|dasNov1|scaffold_62176 (4162-3925) | |
| 633-826, gnl|echTel1|scaffold_195490 (4891-4669) | |
| 633-826, gnl|hg17|chr22 (30338819-30339046) | |
| 633-826, gnl|Hg17|chr22 (30338852-30339091) | |
| 633-826, gnl|loxAfr1|scaffold_389 (228588-228832) | |
| 633-826, gnl|mm7|chr11 (3084180-3083934) | |
| 633-826, gnl|Mm7|chr5 (31798884-31799108) | |
| 633-826, gnl|monDom2|scaffold_141 (424295-424499) | |
| 633-826, gnl|panTro1|chr23 (30441750-30441976) | |
| 633-826, gnl|rheMac2|chr10 (75509571-75509799) | |
| 633-826, gnl|rn3|chr14 (83751913-83751713) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| elu (0.385356) | |
| fcc (0.197785) | |
| eye (0.170503) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| fcc (0.197785) | |
| eye (0.170503) | |
| eep (0.122564) | |
| eru (0.120048) |