Non-Coding RNA Search

Ss1.1-rfcc32b_j7.5

Sequence:


               
               GACCTGTGAGTGTTCCCAGAGCGGGGTGGCAGGAAAGAGTTTGGGTGGGAGGTGGGGCCT
GGGGTCTTGGCCTGGCACCCCTCCCCCCACCTGCCGCTTCCCTATGCTGACCACTGTGTC
CGTGGGGGAAGCTGGCTCCCGCCCCATTTTATATTTCTGGAAGTTTACAGGTCGTGGTGC
ATCAGCCCAAAGTCATTGGCTTGTGTTTTGGGATTTTTTTCTTAGTTTTCAGATTTTTTT
TAAACAAAGTATTTTTTTAGATGCGATAACCCAGAAAGGGCCTGTTGGGTGTGTGTGTGT
CCTGAACCCCTGAAACTGAGATGGGAGCCCGAGTCTCCTGTGGCTGCTCTGTGCCTGGGG
TGCGGGGAGGGTCCCGGCCTCCTGCATTGAGCACGGGAGGATGGGGGGGGGCAGACCCCC
ACCCAGGCTGGCGTCTGGCCCAGCTGAGAGCCCCTCGCTGGGGACAGCCCCAGGCTTGGT
GAGTCGGGAGGGTCCCAGCCGGGGAGCTGGAGCTGGAAGCTGAGGCCCCGTGAGAGGTGA
CCTGTCCGGCCCCCTGGGAGGATGTGGGAGGCTCAACAGACTGTAACCGACACCATCCCT
TTTACTTTGTATTCTGTGTGTGTGTCTTGGTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTGTGAGTGTTCCCAGAGCGGGGTGGCAGGAAAGAGTTTGGGTGGGAGGTGGGGCCT
GGGGTCTTGGCCTGGCACCCCTCCCCCCACCTGCCGCTTCCCTATGCTGACCACTGTGTC
CGTGGGGGAAGCTGGCTCCCGCCCCATTTTATATTTCTGGAAGTTTACAGGTCGTGGTGC
ATCAGCCCAAAGTCATTGGCTTGTGTTTTGGGATTTTTTTCTTAGTTTTCAGATTTTTTT
TAAACAAAGTATTTTTTTAGATGCGATAACCCAGAAAGGGCCTGTTGGGTGTGTGTGTGT
CCTGAACCCCTGAAACTGAGATGGGAGCCCGAGTCTCCTGTGGCTGCTCTGTGCCTGGGG
TGCGGGGAGGGTCCCGGCCTCCTGCATTGAGCACGGGAGGATGGGGGGGGGCAGACCCCC
ACCCAGGCTGGCGTCTGGCCCAGCTGAGAGCCCCTCGCTGGGGACAGCCCCAGGCTTGGT
GAGTCGGGAGGGTCCCAGCCGGGGAGCTGGAGCTGGAAGCTGAGGCCCCGTGAGAGGTGA
CCTGTCCGGCCCCCTGGGAGGATGTGGGAGGCTCAACAGACTGTAACCGACACCATCCCT
TTTACTTTGTATTCTGTGTGTGTGTCTTGGTTTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               486-578, - strand, RNAz p=0.861693

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               486-578, - strand, RNAz p=0.861693

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               16-455, gnl|bosTau2|chr16 (35031353-35031826)
               

               
               16-455, gnl|Hg17|chr1 (6096833-6096380)
               

               
               16-455, gnl|Mm7|chr4 (151379050-151379531)
               


               
               486-635, gnl|bosTau2|chr16 (35031887-35032038)
               

               
               486-635, gnl|Hg17|chr1 (6096318-6096147)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-455, gnl|bosTau2|chr16 (35031353-35031826)
               

               
               16-455, gnl|Hg17|chr1 (6096833-6096380)
               

               
               16-455, gnl|Mm7|chr4 (151379050-151379531)
               


               
               486-635, gnl|bosTau2|chr16 (35031887-35032038)
               

               
               486-635, gnl|Hg17|chr1 (6096318-6096147)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)

	16-455, gnl\|bosTau2\|chr16 (35031353-35031826)
	16-455, gnl\|Hg17\|chr1 (6096833-6096380)
	16-455, gnl\|Mm7\|chr4 (151379050-151379531)

	486-635, gnl\|bosTau2\|chr16 (35031887-35032038)
	486-635, gnl\|Hg17\|chr1 (6096318-6096147)