Non-Coding RNA Search

Ss1.1-rfcc34b_c7.5

Sequence:


               
               TATGGTGGTGGTATCCTTACTCAATTCAAAATATACTTAGAAACAAAAAGTCCAAAACTG
CACCTTATGTTCTTTTGGGGTAAAGTGGTGATCAATTTGATCCCAATAAGTTACCTCCCT
TATTTGAGAAAAATCATATCCCGATTCAAATATAAGCCTAGAATAGAAATTTATCACATC
TATATCCCAAGATAGGAAGAAAATTTCCTCCACATCACATGTACAATGATGTAAATATTT
CAGTAATGTAGAATGCTTCAAGTTTAATGCATGCATCTCTTTAGAGCCAAAACAAATGAA
TTGAAGTTAACATCATAAAGTATTGTCTTTTATTCTGTGTCTTTGGGCTATAAAAGAATC
ATGAATGTAATTATAAGGGTCTGGGTTTGGAACTGGAGGGAGGAATTTTCTTGACTTTCT
CCGTCATGCATGAAGACTCAAACATCTTATTTTGGTTTCTGTATGACATATTAAAACACT
TTAAGTAAAACAGAGATTGAATAATTGACATTTGCCACCTCAAAATATGCCCAATTTCAT
AGAGTATAAAGTAATTGTATGTGCTTGCTGCTATTTTTTCTTCCTTTTAGGATGATAAGT
CATAAAGAACTTACTCTCCATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGGTGGTGGTATCCTTACTCAATTCAAAATATACTTAGAAACAAAAAGTCCAAAACTG
CACCTTATGTTCTTTTGGGGTAAAGTGGTGATCAATTTGATCCCAATAAGTTACCTCCCT
TATTTGAGAAAAATCATATCCCGATTCAAATATAAGCCTAGAATAGAAATTTATCACATC
TATATCCCAAGATAGGAAGAAAATTTCCTCCACATCACATGTACAATGATGTAAATATTT
CAGTAATGTAGAATGCTTCAAGTTTAATGCATGCATCTCTTTAGAGCCAAAACAAATGAA
TTGAAGTTAACATCATAAAGTATTGTCTTTTATTCTGTGTCTTTGGGCTATAAAAGAATC
ATGAATGTAATTATAAGGGTCTGGGTTTGGAACTGGAGGGAGGAATTTTCTTGACTTTCT
CCGTCATGCATGAAGACTCAAACATCTTATTTTGGTTTCTGTATGACATATTAAAACACT
TTAAGTAAAACAGAGATTGAATAATTGACATTTGCCACCTCAAAATATGCCCAATTTCAT
AGAGTATAAAGTAATTGTATGTGCTTGCTGCTATTTTTTCTTCCTTTTAGGATGATAAGT
CATAAAGAACTTACTCTCCATCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               125-242, - strand, RNAz p=0.568394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-242, - strand, RNAz p=0.568394

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-618, gnl|bosTau2|chr7 (64287904-64287296)
               

               
               6-618, gnl|Hg17|chr5 (161513265-161513884)
               

               
               6-618, gnl|Mm7|chr11 (41868765-41868160)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-618, gnl|bosTau2|chr7 (64287904-64287296)
               

               
               6-618, gnl|Hg17|chr5 (161513265-161513884)
               

               
               6-618, gnl|Mm7|chr11 (41868765-41868160)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               cbr (0.127975)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cbr (0.127975)

	6-618, gnl\|bosTau2\|chr7 (64287904-64287296)
	6-618, gnl\|Hg17\|chr5 (161513265-161513884)
	6-618, gnl\|Mm7\|chr11 (41868765-41868160)