Non-Coding RNA Search

Ss1.1-rfcc34b_e21.5

Sequence:


               
               ATACATTGCAGACCTCTATACCAATGTCAGCTTTTTAGAGGAGAAAGTAAACTGTCAGTT
CTCGGGAAAACTTGCAGCTCTCTAGGTACCCGTCTTAATTTGTGTAAGAGAGCAGCGTTT
GCCTGTGAAAGCAAGGAACAGTTTGGGGGTTTTGGTTTTTAGGCAAGAAACGTTTCAGGC
AGGGTGTGTATGCTTTCTTTGCCTTTATTTTTCCTTTCAAAGAAATCTCTTGTAAGTGAC
AAAACTGTGAAATGGGTTTGCCAAAAATGTTGACCTTCGTTAGATGCTTCAAGCCGTGTA
AACCCCAAATGGAACCCTGTCCACACCTGCTCCTCGCCCTCTCCCCTGAGAGCAAGGAGC
TCATCCAACGATGTAATTACCATTCGCTTGCTATTAAAGAGCCTTCCGAACTCCGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACATTGCAGACCTCTATACCAATGTCAGCTTTTTAGAGGAGAAAGTAAACTGTCAGTT
CTCGGGAAAACTTGCAGCTCTCTAGGTACCCGTCTTAATTTGTGTAAGAGAGCAGCGTTT
GCCTGTGAAAGCAAGGAACAGTTTGGGGGTTTTGGTTTTTAGGCAAGAAACGTTTCAGGC
AGGGTGTGTATGCTTTCTTTGCCTTTATTTTTCCTTTCAAAGAAATCTCTTGTAAGTGAC
AAAACTGTGAAATGGGTTTGCCAAAAATGTTGACCTTCGTTAGATGCTTCAAGCCGTGTA
AACCCCAAATGGAACCCTGTCCACACCTGCTCCTCGCCCTCTCCCCTGAGAGCAAGGAGC
TCATCCAACGATGTAATTACCATTCGCTTGCTATTAAAGAGCCTTCCGAACTCCGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               272-386, - strand, RNAz p=0.825541

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-386, - strand, RNAz p=0.825541

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-413, gnl|bosTau2|chr4 (36749571-36749148)
               

               
               1-413, gnl|Hg17|chr7 (29975170-29975618)
               

               
               1-413, gnl|Mm7|chr6 (54666774-54667217)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-413, gnl|bosTau2|chr4 (36749571-36749148)
               

               
               1-413, gnl|Hg17|chr7 (29975170-29975618)
               

               
               1-413, gnl|Mm7|chr6 (54666774-54667217)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fbs (0.350693)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)

	1-413, gnl\|bosTau2\|chr4 (36749571-36749148)
	1-413, gnl\|Hg17\|chr7 (29975170-29975618)
	1-413, gnl\|Mm7\|chr6 (54666774-54667217)