Non-Coding RNA Search

Ss1.1-rfcc34b_k10.5

Sequence:


               
               GCTGGGTTGAGCCGCAACCTAACATGGAAGCAGGGGAGGATCCTGGCCTTTGCCATGGTT
GAGCTTTCAAGACAAAGGGTGGGCCTCTCTGGATGGGATCCAGGTTTCGTTCTGGACGGA
GCAAACCCCAGTCCAGCCGGCGTGGGCCACTTTTCCGGGAACCGTCAGGGCCCTGCCATC
CCCAGAGGGGGTCAGAGGACTATGGGCGGCAGCCATCTTTCCCCGCACCCACTCACAAGA
ACCTTCCTGGGCTAGGTCTGCACCCACAGGCCCTCACCCTTGGCTCCTCTCCCCATGGGT
GCGCAGCCTCTTCCTCCGCCTCCTCCCCCAGCAGATACACACAAACATTGACAACTCATC
AGGATCAAGGGCGCACGTGGCCTTGTGCAGCCTGGCCCTGGCCACACACGCCTGCAGCAG
CAGGAGCCCAACCCATCTGTTTACAGCACACTTGGCGGTGGCTCCCAGGAAAAGCCCCTT
CTCAGGAAAGGAAAACTGGCAAAAGGATTTGGTGGGCCGCCAGCCCTCACAGCTGCCTCC
CGTCCTCCCTCCACAGGTACCTGACCCGCTGGTCTCCCCGCTCTGTCAAGCCCATCTACA
ACAAAGGCCACCGCTGGAACAAGGTGCGCATGCCCGTGGGGTCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGTTGAGCCGCAACCTAACATGGAAGCAGGGGAGGATCCTGGCCTTTGCCATGGTT
GAGCTTTCAAGACAAAGGGTGGGCCTCTCTGGATGGGATCCAGGTTTCGTTCTGGACGGA
GCAAACCCCAGTCCAGCCGGCGTGGGCCACTTTTCCGGGAACCGTCAGGGCCCTGCCATC
CCCAGAGGGGGTCAGAGGACTATGGGCGGCAGCCATCTTTCCCCGCACCCACTCACAAGA
ACCTTCCTGGGCTAGGTCTGCACCCACAGGCCCTCACCCTTGGCTCCTCTCCCCATGGGT
GCGCAGCCTCTTCCTCCGCCTCCTCCCCCAGCAGATACACACAAACATTGACAACTCATC
AGGATCAAGGGCGCACGTGGCCTTGTGCAGCCTGGCCCTGGCCACACACGCCTGCAGCAG
CAGGAGCCCAACCCATCTGTTTACAGCACACTTGGCGGTGGCTCCCAGGAAAAGCCCCTT
CTCAGGAAAGGAAAACTGGCAAAAGGATTTGGTGGGCCGCCAGCCCTCACAGCTGCCTCC
CGTCCTCCCTCCACAGGTACCTGACCCGCTGGTCTCCCCGCTCTGTCAAGCCCATCTACA
ACAAAGGCCACCGCTGGAACAAGGTGCGCATGCCCGTGGGGTCCCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-196, - strand, RNAz p=0.877237

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-196, - strand, RNAz p=0.877237

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               183-298, - strand, RNAmicro p=0.987134

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               183-298, - strand, RNAmicro p=0.987134

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK055407, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK055407, -

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               2-287, gnl|bosTau2|chr23 (16129583-16129294)
               

               
               2-287, gnl|Hg17|chr6 (43748404-43748110)
               

               
               2-287, gnl|Mm7|chr17 (44257188-44257469)
               


               
               513-648, gnl|bosTau2|chr23 (16128861-16128726)
               

               
               513-648, gnl|canFam2|chr12 (15109810-15110019)
               

               
               513-648, gnl|dasNov1|scaffold_9595 (50027-49740)
               

               
               513-648, gnl|echTel1|scaffold_294991 (66453-66210)
               

               
               513-648, gnl|hg17|chr3 (48272667-48272986)
               

               
               513-648, gnl|Hg17|chr6 (43747666-43747530)
               

               
               513-648, gnl|loxAfr1|scaffold_12986 (21158-21453)
               

               
               513-648, gnl|mm7|chr17 (44258177-44257911)
               

               
               513-648, gnl|Mm7|chr17 (44257877-44258000)
               

               
               513-648, gnl|oryCun1|scaffold_211361 (61309-61555)
               

               
               513-648, gnl|panTro1|chr2 (49751568-49751887)
               

               
               513-648, gnl|rheMac2|chr2 (88239383-88239069)
               

               
               513-648, gnl|rn3|chr9 (10416500-10416775)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-287, gnl|bosTau2|chr23 (16129583-16129294)
               

               
               2-287, gnl|Hg17|chr6 (43748404-43748110)
               

               
               2-287, gnl|Mm7|chr17 (44257188-44257469)
               


               
               513-648, gnl|bosTau2|chr23 (16128861-16128726)
               

               
               513-648, gnl|canFam2|chr12 (15109810-15110019)
               

               
               513-648, gnl|dasNov1|scaffold_9595 (50027-49740)
               

               
               513-648, gnl|echTel1|scaffold_294991 (66453-66210)
               

               
               513-648, gnl|hg17|chr3 (48272667-48272986)
               

               
               513-648, gnl|Hg17|chr6 (43747666-43747530)
               

               
               513-648, gnl|loxAfr1|scaffold_12986 (21158-21453)
               

               
               513-648, gnl|mm7|chr17 (44258177-44257911)
               

               
               513-648, gnl|Mm7|chr17 (44257877-44258000)
               

               
               513-648, gnl|oryCun1|scaffold_211361 (61309-61555)
               

               
               513-648, gnl|panTro1|chr2 (49751568-49751887)
               

               
               513-648, gnl|rheMac2|chr2 (88239383-88239069)
               

               
               513-648, gnl|rn3|chr9 (10416500-10416775)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	2-287, gnl\|bosTau2\|chr23 (16129583-16129294)
	2-287, gnl\|Hg17\|chr6 (43748404-43748110)
	2-287, gnl\|Mm7\|chr17 (44257188-44257469)

	513-648, gnl\|bosTau2\|chr23 (16128861-16128726)
	513-648, gnl\|canFam2\|chr12 (15109810-15110019)
	513-648, gnl\|dasNov1\|scaffold_9595 (50027-49740)
	513-648, gnl\|echTel1\|scaffold_294991 (66453-66210)
	513-648, gnl\|hg17\|chr3 (48272667-48272986)
	513-648, gnl\|Hg17\|chr6 (43747666-43747530)
	513-648, gnl\|loxAfr1\|scaffold_12986 (21158-21453)
	513-648, gnl\|mm7\|chr17 (44258177-44257911)
	513-648, gnl\|Mm7\|chr17 (44257877-44258000)
	513-648, gnl\|oryCun1\|scaffold_211361 (61309-61555)
	513-648, gnl\|panTro1\|chr2 (49751568-49751887)
	513-648, gnl\|rheMac2\|chr2 (88239383-88239069)
	513-648, gnl\|rn3\|chr9 (10416500-10416775)