Non-Coding RNA Search

Ss1.1-rfcc35b_j13.5

Sequence:


               
               ACTCGTGCACGAGCCCCTCCCCTCGGTCTCGCGTTCGGCCTGCGCAGGCGCAAGTCCGCA
AGATGGCGGCGGCTGGCGCCGGCCGTCTAAGGCGGGCGGCTTCGGTCCTGCTGCTCCCGG
TCCCGCGCCTGCCTGCTCGGGAGCTGTCAGCTCCGGCTCGGCTCTATCACAAGAAGGTTG
TTGATCATTATGAAAATCCCCGAAACGTGGGGTCCCTTGACAAGACAGCTAAAAATGTTG
GAACCGGATTGGTGGGCGCTCCGGCCTGTGGCGATGTAATGAAATTACAGATTCAAGTGG
ATGACAAGGGGAAGATCGTGGACGCCAGGTTTAAAACATTTGGCTGCGGTTCTGCAATTG
CCTCCAGCTCATTAGCCACCGAATGGGTAAAGGGGAAGACGGTGGAGGAAGCCTTGACCA
TCAAAAACACAGACATCGCCAAGGAGCTCTGCCTGCCCCCGGTGAAGCTGCACTGCTCCA
TGCTGGCCGAAGATGCCATCAAGGCCGCCCTGGCTGATTACAAACTCAAGCAAGAACCCA
AGAAAGGAGAGGCCGAGAAGACATGAGTCCTAGACGAAGCCCCCACCCCAGTCACACAAG
CTGCTCCCCCTCCCACGCCGTCACCGCTTAGCAGTCACGTAGGTGTTCAGATGCCCTCTG
CCCTCGCCCTACAATAAAAGAACCATGAGACCCGCACATTTGCCGTTCACATCGTGGCTC
TAATGCAAGCACAATACACAGTCTAGTTGTTCTGAATCCTGTGGGTTCTCGCAGCTCACG
TTTATAGCCTTACCCCAGCCCATGTCTATTGTGAATTGTGTGGAGGGCCCTTAAAACCGA
AATGAGTAGTGCAGTCTCCCATTTGGGTGGTCAAGTACTAATTTTACCTGAGCCTGTTTT
GGAAAAGCCTACCCGGAGAATGCCTTGGAAAGCTTGTTTGGTAGGCCCAAGTATTGTACA
TAACGCAGATCTGCCTTTATATAATAAAAGAAAGTAAGAACGTTTTTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCGTGCACGAGCCCCTCCCCTCGGTCTCGCGTTCGGCCTGCGCAGGCGCAAGTCCGCA
AGATGGCGGCGGCTGGCGCCGGCCGTCTAAGGCGGGCGGCTTCGGTCCTGCTGCTCCCGG
TCCCGCGCCTGCCTGCTCGGGAGCTGTCAGCTCCGGCTCGGCTCTATCACAAGAAGGTTG
TTGATCATTATGAAAATCCCCGAAACGTGGGGTCCCTTGACAAGACAGCTAAAAATGTTG
GAACCGGATTGGTGGGCGCTCCGGCCTGTGGCGATGTAATGAAATTACAGATTCAAGTGG
ATGACAAGGGGAAGATCGTGGACGCCAGGTTTAAAACATTTGGCTGCGGTTCTGCAATTG
CCTCCAGCTCATTAGCCACCGAATGGGTAAAGGGGAAGACGGTGGAGGAAGCCTTGACCA
TCAAAAACACAGACATCGCCAAGGAGCTCTGCCTGCCCCCGGTGAAGCTGCACTGCTCCA
TGCTGGCCGAAGATGCCATCAAGGCCGCCCTGGCTGATTACAAACTCAAGCAAGAACCCA
AGAAAGGAGAGGCCGAGAAGACATGAGTCCTAGACGAAGCCCCCACCCCAGTCACACAAG
CTGCTCCCCCTCCCACGCCGTCACCGCTTAGCAGTCACGTAGGTGTTCAGATGCCCTCTG
CCCTCGCCCTACAATAAAAGAACCATGAGACCCGCACATTTGCCGTTCACATCGTGGCTC
TAATGCAAGCACAATACACAGTCTAGTTGTTCTGAATCCTGTGGGTTCTCGCAGCTCACG
TTTATAGCCTTACCCCAGCCCATGTCTATTGTGAATTGTGTGGAGGGCCCTTAAAACCGA
AATGAGTAGTGCAGTCTCCCATTTGGGTGGTCAAGTACTAATTTTACCTGAGCCTGTTTT
GGAAAAGCCTACCCGGAGAATGCCTTGGAAAGCTTGTTTGGTAGGCCCAAGTATTGTACA
TAACGCAGATCTGCCTTTATATAATAAAAGAAAGTAAGAACGTTTTTCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|1685102|gb|AAC50885.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1685102|gb|AAC50885.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               44-953, gnl|bosTau2|chr10 (48219139-48219994)
               

               
               44-953, gnl|Hg17|chr12 (107458847-107465539)
               

               
               44-953, gnl|Mm7|chr19 (7488130-7488955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-953, gnl|bosTau2|chr10 (48219139-48219994)
               

               
               44-953, gnl|Hg17|chr12 (107458847-107465539)
               

               
               44-953, gnl|Mm7|chr19 (7488130-7488955)

Expressed library(ies): 53 entry(ies)

More info

Expressed library(ies): 53 entry(ies)

Help | Less info


               
               sme (1.52718)
               

               
               cov (0.660764)
               

               
               cag (0.604778)
               

               
               cly (0.603209)
               

               
               cga (0.558191)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               ece (0.45861)
               

               
               spl (0.429553)
               

               
               hea (0.408998)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               tbr (0.308356)
               

               
               cli (0.305623)
               

               
               eli (0.303628)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 53 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (1.52718)
               

               
               cov (0.660764)
               

               
               cag (0.604778)
               

               
               cly (0.603209)
               

               
               cga (0.558191)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               ece (0.45861)
               

               
               spl (0.429553)
               

               
               hea (0.408998)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               tbr (0.308356)
               

               
               cli (0.305623)
               

               
               eli (0.303628)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	44-953, gnl\|bosTau2\|chr10 (48219139-48219994)
	44-953, gnl\|Hg17\|chr12 (107458847-107465539)
	44-953, gnl\|Mm7\|chr19 (7488130-7488955)

	sme (1.52718)
	cov (0.660764)
	cag (0.604778)
	cly (0.603209)
	cga (0.558191)
	fce (0.543183)
	ton (0.526501)
	pro (0.512033)
	ece (0.45861)
	spl (0.429553)
	hea (0.408998)
	elu (0.385356)
	nep (0.36785)
	fbs (0.350693)
	fhi (0.339155)
	cje (0.330469)
	csp (0.322373)
	tbr (0.308356)
	cli (0.305623)
	eli (0.303628)
	jej (0.296765)
	eje (0.296501)
	ldo (0.291008)
	ssp (0.271039)
	ova (0.258264)
	ese (0.253004)
	ebs (0.236602)
	med (0.232504)
	ecc (0.23007)
	nms (0.213858)
	tes (0.207814)
	fcc (0.197785)
	nlu (0.191681)
	fty (0.17584)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	cki (0.165235)
	nco (0.161734)
	isp (0.150376)
	fat (0.147427)
	lin (0.145603)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	sug (0.127291)
	thg (0.126791)
	clu (0.119646)
	spc (0.113366)
	nbm (0.0993246)