Ss1.1-rfcc35b_k21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCACGCGTCCGCCCACGCGTCCGGGCAGTGCCAAGCTGGCCCGGCAGGCCCAGAGCAA GGAGAAGACGCTACAGAAAATGATGGCCTCAGGCCTGACAGAGAGGGTTGTGAGCGACAA GACCCTGTCCTTCTACTTCCCCCCGTGCGGCAAGATCCCTCCGCCCGTCATCATGGTGCA GAACGTCAGCTTCAAGTATACAAAGGATGGGCCTTGCATCTACAACAATCTGGAGTTCGG GATCGATCTTGACACACGAGTGGCTCTGGTGGGGCCCAATGGAGCCGGGAAGTCCACTCT TCTGAAGCTGCTGACTGGAGAGCTCCTCCCCACCGACGGGATGATCCGAAAACACTCCCA CGTCAAGATAGGGCGTTACCATCAGCATTTACAAGAGCAGCTGGACTTGGACCTCTCGCC CCTGGAGTACATGATGAAGTGCTACCCAGAGATCAAGGAGAAGGAAGAAATGAGGAAGAT CATCGGGCGGTACGGTCTCAGCGGCAAACAGCAGGTGAGCCCAATCCGGAACCTCTCTGA TGGGCAGAAGTGCCGAGTGTGTCTAGCCTGGCTGGCCTGGCAGAACCCCCACATGCTCTT CTTGGACGAGCCCACCAACCACTTGGATATCGAGACCATCGACGCCCTGGCGGACGCCAT CAATGAGTTCGAGGGTGGGATGATGCTGGTCAGCCATGACTTCAGACTCATTCAGCAGGT CGCACAAGAAATCTGGGTCTGTGAGAAGCAGACAATCACCAAGTGGCCGGGAGACATCCT GGCCTACAAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCACGCGTCCGCCCACGCGTCCGGGCAGTGCCAAGCTGGCCCGGCAGGCCCAGAGCAA GGAGAAGACGCTACAGAAAATGATGGCCTCAGGCCTGACAGAGAGGGTTGTGAGCGACAA GACCCTGTCCTTCTACTTCCCCCCGTGCGGCAAGATCCCTCCGCCCGTCATCATGGTGCA GAACGTCAGCTTCAAGTATACAAAGGATGGGCCTTGCATCTACAACAATCTGGAGTTCGG GATCGATCTTGACACACGAGTGGCTCTGGTGGGGCCCAATGGAGCCGGGAAGTCCACTCT TCTGAAGCTGCTGACTGGAGAGCTCCTCCCCACCGACGGGATGATCCGAAAACACTCCCA CGTCAAGATAGGGCGTTACCATCAGCATTTACAAGAGCAGCTGGACTTGGACCTCTCGCC CCTGGAGTACATGATGAAGTGCTACCCAGAGATCAAGGAGAAGGAAGAAATGAGGAAGAT CATCGGGCGGTACGGTCTCAGCGGCAAACAGCAGGTGAGCCCAATCCGGAACCTCTCTGA TGGGCAGAAGTGCCGAGTGTGTCTAGCCTGGCTGGCCTGGCAGAACCCCCACATGCTCTT CTTGGACGAGCCCACCAACCACTTGGATATCGAGACCATCGACGCCCTGGCGGACGCCAT CAATGAGTTCGAGGGTGGGATGATGCTGGTCAGCCATGACTTCAGACTCATTCAGCAGGT CGCACAAGAAATCTGGGTCTGTGAGAAGCAGACAATCACCAAGTGGCCGGGAGACATCCT GGCCTACAAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 603-720, - strand, RNAz p=0.543395 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 603-720, - strand, RNAz p=0.543395 |
| Aligned organism(s): 83 entry(ies) | More info |
| Aligned organism(s): 83 entry(ies) | Help | Less info |
| 21-121, gnl|bosTau2|chr4 (64381513-64381613) | |
| 21-121, gnl|canFam2|chr16 (18205277-18205160) | |
| 21-121, gnl|canFam2|chr16 (18205159-18205237) | |
| 21-121, gnl|danRer3|chr2 (26289918-26290035) | |
| 21-121, gnl|danRer3|chr7 (36107324-36107246) | |
| 21-121, gnl|dasNov1|scaffold_31143 (14658-14541) | |
| 21-121, gnl|dasNov1|scaffold_31143 (14540-14618) | |
| 21-121, gnl|echTel1|scaffold_203334 (7692-7575) | |
| 21-121, gnl|echTel1|scaffold_301601 (78786-78864) | |
| 21-121, gnl|fr1|chrUn (3416389-3416506) | |
| 21-121, gnl|fr1|chrUn (3416507-3416429) | |
| 21-121, gnl|galGal2|chrUn (125726477-125726360) | |
| 21-121, gnl|galGal2|chrUn (125726359-125726437) | |
| 21-121, gnl|hg17|chr3 (88450012-88450129) | |
| 21-121, gnl|hg17|chr7 (150353490-150353568) | |
| 21-121, gnl|Hg17|chr7 (150353588-150353488) | |
| 21-121, gnl|mm7|chr5 (23609351-23609234) | |
| 21-121, gnl|mm7|chr5 (23609233-23609311) | |
| 21-121, gnl|Mm7|chr5 (23609331-23609231) | |
| 21-121, gnl|monDom2|scaffold_7 (11411758-11411641) | |
| 21-121, gnl|monDom2|scaffold_7 (11411640-11411718) | |
| 21-121, gnl|oryCun1|scaffold_208276 (84783-84666) | |
| 21-121, gnl|oryCun1|scaffold_208276 (84665-84743) | |
| 21-121, gnl|panTro1|chr2 (90831604-90831721) | |
| 21-121, gnl|panTro1|chr6_random (16570967-16570889) | |
| 21-121, gnl|rheMac2|chr2 (12554528-12554645) | |
| 21-121, gnl|rheMac2|chr3 (188166931-188167009) | |
| 21-121, gnl|rn3|chr4 (140040166-140040049) | |
| 21-121, gnl|rn3|chr4 (5983645-5983567) | |
| 21-121, gnl|tetNig1|chr6 (4865204-4865321) | |
| 21-121, gnl|tetNig1|chr6 (4865322-4865244) | |
| 211-322, gnl|bosTau2|chr4 (64382155-64382266) | |
| 211-322, gnl|canFam2|chr16 (18204623-18204514) | |
| 211-322, gnl|canFam2|chr16 (18204501-18204625) | |
| 211-322, gnl|danRer3|chr2 (26290258-26290403) | |
| 211-322, gnl|danRer3|chr7 (36108660-36108554) | |
| 211-322, gnl|echTel1|scaffold_203334 (7483-7375) | |
| 211-322, gnl|echTel1|scaffold_301601 (77884-78008) | |
| 211-322, gnl|fr1|chrUn (3416744-3416863) | |
| 211-322, gnl|fr1|chrUn (3416874-3416752) | |
| 211-322, gnl|galGal2|chrUn (125726290-125726202) | |
| 211-322, gnl|galGal2|chrUn (125725064-125725188) | |
| 211-322, gnl|hg17|chr3 (88450221-88450330) | |
| 211-322, gnl|hg17|chr7 (150352805-150352929) | |
| 211-322, gnl|Hg17|chr7 (150352926-150352815) | |
| 211-322, gnl|loxAfr1|scaffold_19096 (7313-7204) | |
| 211-322, gnl|loxAfr1|scaffold_19096 (7191-7315) | |
| 211-322, gnl|mm7|chr5 (23608810-23608701) | |
| 211-322, gnl|mm7|chr5 (23608688-23608812) | |
| 211-322, gnl|Mm7|chr5 (23608809-23608698) | |
| 211-322, gnl|monDom2|scaffold_7 (11411195-11411086) | |
| 211-322, gnl|monDom2|scaffold_7 (11411079-11411197) | |
| 211-322, gnl|oryCun1|scaffold_208276 (84144-84035) | |
| 211-322, gnl|oryCun1|scaffold_208276 (84022-84146) | |
| 211-322, gnl|panTro1|chr2 (90831813-90831922) | |
| 211-322, gnl|panTro1|chr6_random (16571642-16571518) | |
| 211-322, gnl|rheMac2|chr2 (12554737-12554846) | |
| 211-322, gnl|rheMac2|chr3 (188166258-188166382) | |
| 211-322, gnl|rn3|chr4 (140039957-140039848) | |
| 211-322, gnl|rn3|chr4 (5984187-5984063) | |
| 211-322, gnl|tetNig1|chr6 (4865564-4865683) | |
| 211-322, gnl|tetNig1|chr6 (4865687-4865572) | |
| 211-322, gnl|xenTro1|scaffold_1115 (120363-120254) | |
| 211-322, gnl|xenTro1|scaffold_1115 (120240-120364) | |
| 511-720, gnl|bosTau2|chr4 (64383757-64383966) | |
| 511-720, gnl|canFam2|chr16 (18202806-18202640) | |
| 511-720, gnl|danRer3|chr7 (29570505-29570671) | |
| 511-720, gnl|dasNov1|scaffold_31143 (11959-11793) | |
| 511-720, gnl|echTel1|scaffold_301601 (74960-74794) | |
| 511-720, gnl|fr1|chrUn (3417247-3417410) | |
| 511-720, gnl|galGal2|chrUn (125722987-125722826) | |
| 511-720, gnl|hg17|chr7 (71012816-71012984) | |
| 511-720, gnl|Hg17|chr7 (150349820-150349611) | |
| 511-720, gnl|loxAfr1|scaffold_19096 (4914-4748) | |
| 511-720, gnl|mm7|chr5 (23607130-23606965) | |
| 511-720, gnl|Mm7|chr5 (23607178-23606970) | |
| 511-720, gnl|monDom2|scaffold_7 (11408978-11408813) | |
| 511-720, gnl|oryCun1|scaffold_208276 (82468-82302) | |
| 511-720, gnl|panTro1|chr6 (72972271-72972439) | |
| 511-720, gnl|rheMac2|chr3 (188163210-188163044) | |
| 511-720, gnl|rn3|chr4 (5985710-5985874) | |
| 511-720, gnl|tetNig1|chr6 (4866072-4866237) | |
| 511-720, gnl|xenTro1|scaffold_1115 (119859-119694) |
| Aligned organism(s): 83 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-121, gnl|bosTau2|chr4 (64381513-64381613) | |
| 21-121, gnl|canFam2|chr16 (18205277-18205160) | |
| 21-121, gnl|canFam2|chr16 (18205159-18205237) | |
| 21-121, gnl|danRer3|chr2 (26289918-26290035) | |
| 21-121, gnl|danRer3|chr7 (36107324-36107246) | |
| 21-121, gnl|dasNov1|scaffold_31143 (14658-14541) | |
| 21-121, gnl|dasNov1|scaffold_31143 (14540-14618) | |
| 21-121, gnl|echTel1|scaffold_203334 (7692-7575) | |
| 21-121, gnl|echTel1|scaffold_301601 (78786-78864) | |
| 21-121, gnl|fr1|chrUn (3416389-3416506) | |
| 21-121, gnl|fr1|chrUn (3416507-3416429) | |
| 21-121, gnl|galGal2|chrUn (125726477-125726360) | |
| 21-121, gnl|galGal2|chrUn (125726359-125726437) | |
| 21-121, gnl|hg17|chr3 (88450012-88450129) | |
| 21-121, gnl|hg17|chr7 (150353490-150353568) | |
| 21-121, gnl|Hg17|chr7 (150353588-150353488) | |
| 21-121, gnl|mm7|chr5 (23609351-23609234) | |
| 21-121, gnl|mm7|chr5 (23609233-23609311) | |
| 21-121, gnl|Mm7|chr5 (23609331-23609231) | |
| 21-121, gnl|monDom2|scaffold_7 (11411758-11411641) | |
| 21-121, gnl|monDom2|scaffold_7 (11411640-11411718) | |
| 21-121, gnl|oryCun1|scaffold_208276 (84783-84666) | |
| 21-121, gnl|oryCun1|scaffold_208276 (84665-84743) | |
| 21-121, gnl|panTro1|chr2 (90831604-90831721) | |
| 21-121, gnl|panTro1|chr6_random (16570967-16570889) | |
| 21-121, gnl|rheMac2|chr2 (12554528-12554645) | |
| 21-121, gnl|rheMac2|chr3 (188166931-188167009) | |
| 21-121, gnl|rn3|chr4 (140040166-140040049) | |
| 21-121, gnl|rn3|chr4 (5983645-5983567) | |
| 21-121, gnl|tetNig1|chr6 (4865204-4865321) | |
| 21-121, gnl|tetNig1|chr6 (4865322-4865244) | |
| 211-322, gnl|bosTau2|chr4 (64382155-64382266) | |
| 211-322, gnl|canFam2|chr16 (18204623-18204514) | |
| 211-322, gnl|canFam2|chr16 (18204501-18204625) | |
| 211-322, gnl|danRer3|chr2 (26290258-26290403) | |
| 211-322, gnl|danRer3|chr7 (36108660-36108554) | |
| 211-322, gnl|echTel1|scaffold_203334 (7483-7375) | |
| 211-322, gnl|echTel1|scaffold_301601 (77884-78008) | |
| 211-322, gnl|fr1|chrUn (3416744-3416863) | |
| 211-322, gnl|fr1|chrUn (3416874-3416752) | |
| 211-322, gnl|galGal2|chrUn (125726290-125726202) | |
| 211-322, gnl|galGal2|chrUn (125725064-125725188) | |
| 211-322, gnl|hg17|chr3 (88450221-88450330) | |
| 211-322, gnl|hg17|chr7 (150352805-150352929) | |
| 211-322, gnl|Hg17|chr7 (150352926-150352815) | |
| 211-322, gnl|loxAfr1|scaffold_19096 (7313-7204) | |
| 211-322, gnl|loxAfr1|scaffold_19096 (7191-7315) | |
| 211-322, gnl|mm7|chr5 (23608810-23608701) | |
| 211-322, gnl|mm7|chr5 (23608688-23608812) | |
| 211-322, gnl|Mm7|chr5 (23608809-23608698) | |
| 211-322, gnl|monDom2|scaffold_7 (11411195-11411086) | |
| 211-322, gnl|monDom2|scaffold_7 (11411079-11411197) | |
| 211-322, gnl|oryCun1|scaffold_208276 (84144-84035) | |
| 211-322, gnl|oryCun1|scaffold_208276 (84022-84146) | |
| 211-322, gnl|panTro1|chr2 (90831813-90831922) | |
| 211-322, gnl|panTro1|chr6_random (16571642-16571518) | |
| 211-322, gnl|rheMac2|chr2 (12554737-12554846) | |
| 211-322, gnl|rheMac2|chr3 (188166258-188166382) | |
| 211-322, gnl|rn3|chr4 (140039957-140039848) | |
| 211-322, gnl|rn3|chr4 (5984187-5984063) | |
| 211-322, gnl|tetNig1|chr6 (4865564-4865683) | |
| 211-322, gnl|tetNig1|chr6 (4865687-4865572) | |
| 211-322, gnl|xenTro1|scaffold_1115 (120363-120254) | |
| 211-322, gnl|xenTro1|scaffold_1115 (120240-120364) | |
| 511-720, gnl|bosTau2|chr4 (64383757-64383966) | |
| 511-720, gnl|canFam2|chr16 (18202806-18202640) | |
| 511-720, gnl|danRer3|chr7 (29570505-29570671) | |
| 511-720, gnl|dasNov1|scaffold_31143 (11959-11793) | |
| 511-720, gnl|echTel1|scaffold_301601 (74960-74794) | |
| 511-720, gnl|fr1|chrUn (3417247-3417410) | |
| 511-720, gnl|galGal2|chrUn (125722987-125722826) | |
| 511-720, gnl|hg17|chr7 (71012816-71012984) | |
| 511-720, gnl|Hg17|chr7 (150349820-150349611) | |
| 511-720, gnl|loxAfr1|scaffold_19096 (4914-4748) | |
| 511-720, gnl|mm7|chr5 (23607130-23606965) | |
| 511-720, gnl|Mm7|chr5 (23607178-23606970) | |
| 511-720, gnl|monDom2|scaffold_7 (11408978-11408813) | |
| 511-720, gnl|oryCun1|scaffold_208276 (82468-82302) | |
| 511-720, gnl|panTro1|chr6 (72972271-72972439) | |
| 511-720, gnl|rheMac2|chr3 (188163210-188163044) | |
| 511-720, gnl|rn3|chr4 (5985710-5985874) | |
| 511-720, gnl|tetNig1|chr6 (4866072-4866237) | |
| 511-720, gnl|xenTro1|scaffold_1115 (119859-119694) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| csp (0.161186) | |
| cag (0.151194) |