Non-Coding RNA Search

Ss1.1-rfce04c_n16.5

Sequence:


               
               ACAGAATTTCTACTGTGTTTTTTTTTTTTTTTTTTTTTTAACCCAGGGCCTCATGTTGGG
AATAAGCTGGCAGTGTTGTTTTCCGCCAGCATCTCATGTGATGACACAGTTCAACCAAAC
CCCACCTAATGGGGCCTAACAGGAAGAATGATAATTACTTCACATGCCACGTGGAATCTA
TTTACAAATTGCTCCGTCTTGTTTATTAATTTCTTCCCAACCACTTTTTCCAAGCTTGTC
ATCAGGAAAGACATTTCCAACTTCGGATTGTCAGTGAACCTTGGGTCACTTATATTTTCA
GGTTGTTAATATGTTTTTTATTCCTATTTAAAGTGTAGCTCGATTTATTACCACGAATTT
TTTTTTCTTCCTCCTCATTTGCACCATTACACTCTTTCCTTTTCTGGGTCAGAGTCTTGG
TCTATAATCATCTTGCCAAATCTTGAACTGCACAGAAAGAGTATACACATGCACTGTTGA
TAATGCAGTGGTGTTCAGTAGCTTTTCTAAAAATGTTTGATTCGAAATGTTAACATACTG
ACAAAGATTGGTAAGGAACAGACATGGTTTCTTAGCGTAAATAAAAATCAGTATAGGAAA
AGGTGCTACTGTTTAACTTTAAAACATATTTTCTAGTATTAAGGATTGTATAATATGACA
ATGGACAAAAATAGTGTTGACGTGGACGTTAAAAGATTTATAAGTGATTTTAGACTATGT
TCTCCTTTGTATTTGCTAATGTGGGCGCAAGTTAGTATTGAGAACTTATGACAGATGGCC
AAAGGAATATAGTTTAGAACAAAACATGGGTATGCTGCAACTAACTATAAAATTGTAATA
TAACCATGTAAAATAATTATCTATGTTGTTTTCCTGTGGTCACTTAAAGTGGCAGCTACG
GTAGTTGCTAATTCCTTATTATGCAAACAAAATCAATAAAAATTTGTTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAATTTCTACTGTGTTTTTTTTTTTTTTTTTTTTTTAACCCAGGGCCTCATGTTGGG
AATAAGCTGGCAGTGTTGTTTTCCGCCAGCATCTCATGTGATGACACAGTTCAACCAAAC
CCCACCTAATGGGGCCTAACAGGAAGAATGATAATTACTTCACATGCCACGTGGAATCTA
TTTACAAATTGCTCCGTCTTGTTTATTAATTTCTTCCCAACCACTTTTTCCAAGCTTGTC
ATCAGGAAAGACATTTCCAACTTCGGATTGTCAGTGAACCTTGGGTCACTTATATTTTCA
GGTTGTTAATATGTTTTTTATTCCTATTTAAAGTGTAGCTCGATTTATTACCACGAATTT
TTTTTTCTTCCTCCTCATTTGCACCATTACACTCTTTCCTTTTCTGGGTCAGAGTCTTGG
TCTATAATCATCTTGCCAAATCTTGAACTGCACAGAAAGAGTATACACATGCACTGTTGA
TAATGCAGTGGTGTTCAGTAGCTTTTCTAAAAATGTTTGATTCGAAATGTTAACATACTG
ACAAAGATTGGTAAGGAACAGACATGGTTTCTTAGCGTAAATAAAAATCAGTATAGGAAA
AGGTGCTACTGTTTAACTTTAAAACATATTTTCTAGTATTAAGGATTGTATAATATGACA
ATGGACAAAAATAGTGTTGACGTGGACGTTAAAAGATTTATAAGTGATTTTAGACTATGT
TCTCCTTTGTATTTGCTAATGTGGGCGCAAGTTAGTATTGAGAACTTATGACAGATGGCC
AAAGGAATATAGTTTAGAACAAAACATGGGTATGCTGCAACTAACTATAAAATTGTAATA
TAACCATGTAAAATAATTATCTATGTTGTTTTCCTGTGGTCACTTAAAGTGGCAGCTACG
GTAGTTGCTAATTCCTTATTATGCAAACAAAATCAATAAAAATTTGTTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               22-498, gnl|bosTau2|chr12 (28511241-28511696)
               

               
               22-498, gnl|Hg17|chr13 (77368714-77368253)
               

               
               22-498, gnl|Mm7|chr14 (98247982-98247482)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-498, gnl|bosTau2|chr12 (28511241-28511696)
               

               
               22-498, gnl|Hg17|chr13 (77368714-77368253)
               

               
               22-498, gnl|Mm7|chr14 (98247982-98247482)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               fce (0.814775)
               

               
               sug (0.763747)
               

               
               fli (0.405762)
               

               
               fat (0.294855)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.814775)
               

               
               sug (0.763747)
               

               
               fli (0.405762)
               

               
               fat (0.294855)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	22-498, gnl\|bosTau2\|chr12 (28511241-28511696)
	22-498, gnl\|Hg17\|chr13 (77368714-77368253)
	22-498, gnl\|Mm7\|chr14 (98247982-98247482)

	fce (0.814775)
	sug (0.763747)
	fli (0.405762)
	fat (0.294855)
	ret (0.257467)
	cbe (0.239234)
	ebs (0.236602)
	aor (0.195274)
	fbs (0.175346)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	eli (0.151814)
	lyg (0.133103)
	ute (0.132784)
	clu (0.119646)
	cty (0.10408)