Non-Coding RNA Search

Ss1.1-rfce05c_j9.5

Sequence:


               
               TTTGAGAAAGAAAAGGGAACTTTTCCTGTTGAATGTTGGCTCTGTGTGTGTGTGTGTGTG
TGCGTGTTTGTGGGTGTTTTTAATGGATTTTATTTTTGTGAAATACCTTGACAATTATGT
AGCAAAATTCGCTTTTATCTCCCAGTCAACCTTTTGGTTCCAGAGTCAACCCTGGGTGTC
GCTAATTGGAAGAATTCTCTCCTGGGTATGTGAACAGAGAGGTGCCATCCTCAAGAGTTG
AGGTGGTGGAGAGGGTTGGGAGAAACTGAAGTTCGATACATTTCCATAAAGTTTCCTTCC
TGCAGTTAAAAGGTAGGAGACATGGAGCCGAGGCTGTGTGTCCCCGAGGGAACTGGCACG
AGGCCCCTCCCTCGGCGCCCTTGCTGCTGCTTTATCTGAATCTGTTCACACTCGTGTTTG
TGGGCTTCTTCTGTAACGCCACAGCTGAAACAGCACGTTCTTTTCCTTTTTCTGCTTTCA
GTTCATTGTGTAAATGGTTCATTTTTTTCTCTTGTGAGCTCCGGTGACTGTGTCAGGGCT
TCTGTAGCAAACAGTCACCCCTCGTGGGCAGAAAAACAAAACCCAAGAAGAGTCTTGCTC
ACCGGAGGCCCCAAGCCTCAGGCCTGCGCCATCCAGAGCAAGGCCGTTTATGCTCCGCTG
TTGAGAAGCACCTTTCCACCAGCTGTATTCAACACTACAATGCAGTTTGAAAACTATATT
TGCATCCAAGACAATAAAAGGCCATATTTTTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAGAAAGAAAAGGGAACTTTTCCTGTTGAATGTTGGCTCTGTGTGTGTGTGTGTGTG
TGCGTGTTTGTGGGTGTTTTTAATGGATTTTATTTTTGTGAAATACCTTGACAATTATGT
AGCAAAATTCGCTTTTATCTCCCAGTCAACCTTTTGGTTCCAGAGTCAACCCTGGGTGTC
GCTAATTGGAAGAATTCTCTCCTGGGTATGTGAACAGAGAGGTGCCATCCTCAAGAGTTG
AGGTGGTGGAGAGGGTTGGGAGAAACTGAAGTTCGATACATTTCCATAAAGTTTCCTTCC
TGCAGTTAAAAGGTAGGAGACATGGAGCCGAGGCTGTGTGTCCCCGAGGGAACTGGCACG
AGGCCCCTCCCTCGGCGCCCTTGCTGCTGCTTTATCTGAATCTGTTCACACTCGTGTTTG
TGGGCTTCTTCTGTAACGCCACAGCTGAAACAGCACGTTCTTTTCCTTTTTCTGCTTTCA
GTTCATTGTGTAAATGGTTCATTTTTTTCTCTTGTGAGCTCCGGTGACTGTGTCAGGGCT
TCTGTAGCAAACAGTCACCCCTCGTGGGCAGAAAAACAAAACCCAAGAAGAGTCTTGCTC
ACCGGAGGCCCCAAGCCTCAGGCCTGCGCCATCCAGAGCAAGGCCGTTTATGCTCCGCTG
TTGAGAAGCACCTTTCCACCAGCTGTATTCAACACTACAATGCAGTTTGAAAACTATATT
TGCATCCAAGACAATAAAAGGCCATATTTTTTGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               257-376, - strand, RNAz p=0.595202

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-376, - strand, RNAz p=0.595202

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-756, gnl|bosTau2|chr17 (29136883-29136107)
               

               
               1-756, gnl|Hg17|chr12 (121155996-121156770)
               

               
               1-756, gnl|Mm7|chr5 (122701772-122702510)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr17 (29136883-29136107)
               

               
               1-756, gnl|Hg17|chr12 (121155996-121156770)
               

               
               1-756, gnl|Mm7|chr5 (122701772-122702510)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               tbr (0.308356)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)

	1-756, gnl\|bosTau2\|chr17 (29136883-29136107)
	1-756, gnl\|Hg17\|chr12 (121155996-121156770)
	1-756, gnl\|Mm7\|chr5 (122701772-122702510)

	tbr (0.308356)
	fce (0.271592)
	nms (0.213858)
	lnt (0.142308)
	pla (0.133672)
	nmm (0.132802)
	sug (0.127291)