Non-Coding RNA Search

Ss1.1-rfce08c_h6.5

Sequence:


               
               AAGAAAAGACCTGCTCCTATAAAACATGGGGCAGCCTTGGAACGTTGTGTGTTTGTGGGG
TTTTTTGCTTTTTTGTTTTTTGTTTTTTGGCAGTTTACTTTTTCAAGGTTTTCCATCTCC
CCCTTTGTTCCGACCTTGTGTCCATGACCTCATTCCTTGACACCAGGAAAGCTCCGCTTG
TATGCAACACTGATGCTCCCTGCTCGTGTGGAGTCAGGATGCAAGGAAAGCAGTGGGGGG
TCTCCCCAAGTGGGGCTTAGCTCAGGGGATAAGGAGCGATGGGAGCTACCAAGAATGCCT
GACATAAGTGTTGGTCTTTTCTTGTCGGGAATGATGGATGCTGTCCCACACACACACCCC
CAGCCCCACACTTGCACACACACACACATCCACACACACACAGGGAATGATTGGTTTGTC
AGAACTCACTGTAGTACATCAGGCTTGCACTCCGCGTCCTATATCTAGCAGCATGGGGTA
CGTTTGGCAGTTCACCCCATTAGGGGGTAAATAATTTATGACCATTCATCTGTTTTTATG
AATTTTTTTATCTAGACAATAATTGTAAATAAAGAACTCACCATCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAAAGACCTGCTCCTATAAAACATGGGGCAGCCTTGGAACGTTGTGTGTTTGTGGGG
TTTTTTGCTTTTTTGTTTTTTGTTTTTTGGCAGTTTACTTTTTCAAGGTTTTCCATCTCC
CCCTTTGTTCCGACCTTGTGTCCATGACCTCATTCCTTGACACCAGGAAAGCTCCGCTTG
TATGCAACACTGATGCTCCCTGCTCGTGTGGAGTCAGGATGCAAGGAAAGCAGTGGGGGG
TCTCCCCAAGTGGGGCTTAGCTCAGGGGATAAGGAGCGATGGGAGCTACCAAGAATGCCT
GACATAAGTGTTGGTCTTTTCTTGTCGGGAATGATGGATGCTGTCCCACACACACACCCC
CAGCCCCACACTTGCACACACACACACATCCACACACACACAGGGAATGATTGGTTTGTC
AGAACTCACTGTAGTACATCAGGCTTGCACTCCGCGTCCTATATCTAGCAGCATGGGGTA
CGTTTGGCAGTTCACCCCATTAGGGGGTAAATAATTTATGACCATTCATCTGTTTTTATG
AATTTTTTTATCTAGACAATAATTGTAAATAAAGAACTCACCATCTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               168-284, - strand, RNAz p=0.906958

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-284, - strand, RNAz p=0.906958

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-588, gnl|bosTau2|chr22 (44537928-44537371)
               

               
               5-588, gnl|Hg17|chr3 (10343269-10342759)
               

               
               5-588, gnl|Mm7|chr6 (113907218-113906613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-588, gnl|bosTau2|chr22 (44537928-44537371)
               

               
               5-588, gnl|Hg17|chr3 (10343269-10342759)
               

               
               5-588, gnl|Mm7|chr6 (113907218-113906613)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.543183)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               ton (0.1755)
               

               
               ute (0.132784)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               ton (0.1755)
               

               
               ute (0.132784)
               

               
               cly (0.120642)

	5-588, gnl\|bosTau2\|chr22 (44537928-44537371)
	5-588, gnl\|Hg17\|chr3 (10343269-10342759)
	5-588, gnl\|Mm7\|chr6 (113907218-113906613)

	fce (0.543183)
	fbs (0.350693)
	hyp (0.285673)
	cbe (0.239234)
	ton (0.1755)
	ute (0.132784)
	cly (0.120642)