Non-Coding RNA Search

Ss1.1-rfce09c_f19.5

Sequence:


               
               TATCCAACCCACAGATTGAGTGGCAGAATAGCACAATTGACAGTGAGGATGGGGAGCAGT
TTGACAACATGACTGATGGAGTAGCTGAGCCGATGCATGGGAGCTTAACCGGGGTTAAAC
TGAGCAGCCAACAGGCCTGAGTGCCAGGTTCTCTGGCATGGGTGACAGATGCTGCAGCCT
GGAACTCCCTTCTCCTTTGAGTATGACTGCAAAGCTATGTTCTAACTGGTACTGCCTTTT
GAGGGCTGGGTCATCAGGCCGTGGGGACATGTGGCCACTGCAGTCCCAATGGTTATTTCT
GAGTCTCTGACACATGATTGGCTGATCTTGCTTTAGAACGTCCTGTGACAGACACAGTAA
CTAAATGTGAAAAACCAATAAGCTGGTGGCTCACGAACGCACACGAGGAAAAGCAGAGGT
TTATTTTATCTGCCTTCTCAACGTTTCTTTCCCTCTGTAAAGTGTTTGATTGGATGTCCT
TAAGACGCGTTCTCCTGATTCACATGGTAGTGTAGGGCCAGCATACAAGCTACCAGTCCC
ATGTGTATAGTAGACTTTGGGGAAGTCGATTTTTTTTCCATGTATTCATTCTGAATAGTT
GAAATGTATATTTGTACAGTCTTTTAGCCCTATTCAAGTGATGCTTATGATACTGTTACT
GTGTACCCATCATAGGTTTCTTTTTTAGTGTTACCCTTGCTGTGTAATAAGCGCTGTATC
TAGTTGACCTAGCAAAAGCCTGAAACTACGCTAGTGTGGACTTCGGGACAGACCTTAGTT
TTTGCACATAACCTTGTACAATCTCGCCACAGAGGCCAGCCACATAAGATATATATCTGG
ACTCTCTTGTATTATAGAATTTTTCTTGTTTCTGAATATCCTTGACATTACAGCTGACAA
AAACAAAAACTGGTATTTCAGAGGTTTTCTGAAATCTTTTAAGCTAAAATCACATGCAAG
AATTGACTTTGCAGCTACTAATTTTGACACCTTTTAGATCTGTATGAAAGTGTGTTGTGT
TGAAGCAGCCAACCAATGAGGGCTGCATTTTGGATATTTAGTTTTATCTTTAGTTAAAAC
ACCACCCTGGTGTATTCATTTATACCATCTAATATATGACACACTGTTGTAGTATGTATA
ATTTTGTGATCTTTATTTCCCTTTGTATTCATTTTAAGCATCTAAATAAATTGCTGTATT
GTGCTTAATGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCCAACCCACAGATTGAGTGGCAGAATAGCACAATTGACAGTGAGGATGGGGAGCAGT
TTGACAACATGACTGATGGAGTAGCTGAGCCGATGCATGGGAGCTTAACCGGGGTTAAAC
TGAGCAGCCAACAGGCCTGAGTGCCAGGTTCTCTGGCATGGGTGACAGATGCTGCAGCCT
GGAACTCCCTTCTCCTTTGAGTATGACTGCAAAGCTATGTTCTAACTGGTACTGCCTTTT
GAGGGCTGGGTCATCAGGCCGTGGGGACATGTGGCCACTGCAGTCCCAATGGTTATTTCT
GAGTCTCTGACACATGATTGGCTGATCTTGCTTTAGAACGTCCTGTGACAGACACAGTAA
CTAAATGTGAAAAACCAATAAGCTGGTGGCTCACGAACGCACACGAGGAAAAGCAGAGGT
TTATTTTATCTGCCTTCTCAACGTTTCTTTCCCTCTGTAAAGTGTTTGATTGGATGTCCT
TAAGACGCGTTCTCCTGATTCACATGGTAGTGTAGGGCCAGCATACAAGCTACCAGTCCC
ATGTGTATAGTAGACTTTGGGGAAGTCGATTTTTTTTCCATGTATTCATTCTGAATAGTT
GAAATGTATATTTGTACAGTCTTTTAGCCCTATTCAAGTGATGCTTATGATACTGTTACT
GTGTACCCATCATAGGTTTCTTTTTTAGTGTTACCCTTGCTGTGTAATAAGCGCTGTATC
TAGTTGACCTAGCAAAAGCCTGAAACTACGCTAGTGTGGACTTCGGGACAGACCTTAGTT
TTTGCACATAACCTTGTACAATCTCGCCACAGAGGCCAGCCACATAAGATATATATCTGG
ACTCTCTTGTATTATAGAATTTTTCTTGTTTCTGAATATCCTTGACATTACAGCTGACAA
AAACAAAAACTGGTATTTCAGAGGTTTTCTGAAATCTTTTAAGCTAAAATCACATGCAAG
AATTGACTTTGCAGCTACTAATTTTGACACCTTTTAGATCTGTATGAAAGTGTGTTGTGT
TGAAGCAGCCAACCAATGAGGGCTGCATTTTGGATATTTAGTTTTATCTTTAGTTAAAAC
ACCACCCTGGTGTATTCATTTATACCATCTAATATATGACACACTGTTGTAGTATGTATA
ATTTTGTGATCTTTATTTCCCTTTGTATTCATTTTAAGCATCTAAATAAATTGCTGTATT
GTGCTTAATGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               976-1133, + strand, RNAz p=0.924925

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               976-1133, + strand, RNAz p=0.924925

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015339, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015339, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1212, gnl|bosTau2|chr13 (59142627-59143843)
               

               
               1-1212, gnl|Hg17|chr20 (48941488-48940289)
               

               
               1-1212, gnl|Mm7|chr2 (167974840-167973642)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1212, gnl|bosTau2|chr13 (59142627-59143843)
               

               
               1-1212, gnl|Hg17|chr20 (48941488-48940289)
               

               
               1-1212, gnl|Mm7|chr2 (167974840-167973642)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               thg (0.633955)
               

               
               fce (0.543183)
               

               
               bla (0.497389)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.633955)
               

               
               fce (0.543183)
               

               
               bla (0.497389)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-1212, gnl\|bosTau2\|chr13 (59142627-59143843)
	1-1212, gnl\|Hg17\|chr20 (48941488-48940289)
	1-1212, gnl\|Mm7\|chr2 (167974840-167973642)

	thg (0.633955)
	fce (0.543183)
	bla (0.497389)
	tes (0.207814)
	hea (0.204499)
	nlu (0.191681)
	sag (0.182715)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	eye (0.170503)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	lnt (0.142308)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	ebs (0.118301)
	spc (0.113366)