Non-Coding RNA Search

Ss1.1-rfce09c_h3.5.5

Sequence:


               
               GGTTCCAGGCGTTTCTTGGTGAGAGGGCCGGGTGGAGAGGGCTGGAGTCTACCTTCCAGC
GAAGAGGTTGTGGCGTCTGCTGGTTCCAGGCGTTTCTTGCTCCAGACAGGATGATCGAGG
TTGTTTGCAACGACCGTCTGGGGAAGAAGGTCCGCGTTAAATGCAATACGGATGACACCA
TCGGGGACCTTAAGAAGCTGATCGCAGCCCAAACTGGCACCCGTTGGAACAAGATCGTAT
TGAAGAAGTGGTACACGATTTTTAAGGACCACGTGTCTCTGGGGGACTATGAAATCCATG
ATGGGATGAACCTGGAGCTTTATTACCAATAAAGCAGAATTCCTTCCCCCCCTACCTTGC
CCTTCTCTCTTCTCCTACCCTCACCCCCCACAATAGTGTGGCTGCTTGTTTTTGAAAACT
CATGTTAATAAAAACTTAGAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCCAGGCGTTTCTTGGTGAGAGGGCCGGGTGGAGAGGGCTGGAGTCTACCTTCCAGC
GAAGAGGTTGTGGCGTCTGCTGGTTCCAGGCGTTTCTTGCTCCAGACAGGATGATCGAGG
TTGTTTGCAACGACCGTCTGGGGAAGAAGGTCCGCGTTAAATGCAATACGGATGACACCA
TCGGGGACCTTAAGAAGCTGATCGCAGCCCAAACTGGCACCCGTTGGAACAAGATCGTAT
TGAAGAAGTGGTACACGATTTTTAAGGACCACGTGTCTCTGGGGGACTATGAAATCCATG
ATGGGATGAACCTGGAGCTTTATTACCAATAAAGCAGAATTCCTTCCCCCCCTACCTTGC
CCTTCTCTCTTCTCCTACCCTCACCCCCCACAATAGTGTGGCTGCTTGTTTTTGAAAACT
CATGTTAATAAAAACTTAGAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13384784|ref|NP_079677.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13384784|ref|NP_079677.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               273-392, - strand, RNAz p=0.749029

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-392, - strand, RNAz p=0.749029

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               38-475, gnl|bosTau2|chr3 (56203879-56203450)
               

               
               38-475, gnl|Hg17|chr17 (27579291-27578880)
               

               
               38-475, gnl|Mm7|chr12 (85870140-85870552)
               


               
               46-462, gnl|bosTau2|chr1 (98783418-98783821)
               

               
               46-462, gnl|Hg17|chr17 (27579318-27578892)
               

               
               46-462, gnl|Mm7|chr12 (85475855-85476211)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-475, gnl|bosTau2|chr3 (56203879-56203450)
               

               
               38-475, gnl|Hg17|chr17 (27579291-27578880)
               

               
               38-475, gnl|Mm7|chr12 (85870140-85870552)
               


               
               46-462, gnl|bosTau2|chr1 (98783418-98783821)
               

               
               46-462, gnl|Hg17|chr17 (27579318-27578892)
               

               
               46-462, gnl|Mm7|chr12 (85475855-85476211)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

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               fce (1.62955)
               

               
               cga (1.11638)
               

               
               cag (1.05836)
               

               
               fty (1.05504)
               

               
               ill (1.05356)
               

               
               nco (0.970403)
               

               
               nca (0.958117)
               

               
               nbm (0.695272)
               

               
               ece (0.687916)
               

               
               nms (0.641574)
               

               
               cli (0.611247)
               

               
               col (0.585023)
               

               
               pty (0.570858)
               

               
               lnt (0.569233)
               

               
               nep (0.551775)
               

               
               duo (0.518403)
               

               
               fhi (0.508733)
               

               
               jej (0.494609)
               

               
               ecc (0.46014)
               

               
               hlv (0.417769)
               

               
               fli (0.405762)
               

               
               nmm (0.398406)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               csp (0.322373)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (1.62955)
               

               
               cga (1.11638)
               

               
               cag (1.05836)
               

               
               fty (1.05504)
               

               
               ill (1.05356)
               

               
               nco (0.970403)
               

               
               nca (0.958117)
               

               
               nbm (0.695272)
               

               
               ece (0.687916)
               

               
               nms (0.641574)
               

               
               cli (0.611247)
               

               
               col (0.585023)
               

               
               pty (0.570858)
               

               
               lnt (0.569233)
               

               
               nep (0.551775)
               

               
               duo (0.518403)
               

               
               fhi (0.508733)
               

               
               jej (0.494609)
               

               
               ecc (0.46014)
               

               
               hlv (0.417769)
               

               
               fli (0.405762)
               

               
               nmm (0.398406)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               eye (0.341006)
               

               
               csp (0.322373)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               ute (0.265569)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               che (0.136314)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	38-475, gnl\|bosTau2\|chr3 (56203879-56203450)
	38-475, gnl\|Hg17\|chr17 (27579291-27578880)
	38-475, gnl\|Mm7\|chr12 (85870140-85870552)

	46-462, gnl\|bosTau2\|chr1 (98783418-98783821)
	46-462, gnl\|Hg17\|chr17 (27579318-27578892)
	46-462, gnl\|Mm7\|chr12 (85475855-85476211)

	fce (1.62955)
	cga (1.11638)
	cag (1.05836)
	fty (1.05504)
	ill (1.05356)
	nco (0.970403)
	nca (0.958117)
	nbm (0.695272)
	ece (0.687916)
	nms (0.641574)
	cli (0.611247)
	col (0.585023)
	pty (0.570858)
	lnt (0.569233)
	nep (0.551775)
	duo (0.518403)
	fhi (0.508733)
	jej (0.494609)
	ecc (0.46014)
	hlv (0.417769)
	fli (0.405762)
	nmm (0.398406)
	fcc (0.39557)
	elu (0.385356)
	ese (0.379507)
	ebs (0.354904)
	fbs (0.350693)
	med (0.348756)
	eye (0.341006)
	csp (0.322373)
	eje (0.296501)
	hyp (0.285673)
	ute (0.265569)
	cly (0.241284)
	eru (0.240096)
	mas (0.210305)
	nlu (0.191681)
	sto (0.179824)
	cut (0.169924)
	eli (0.151814)
	che (0.136314)
	jca (0.11396)
	cty (0.10408)