Non-Coding RNA Search

Ss1.1-rfce09c_j16.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAAAACAACAACAAAAAAAAAAGACAA
TGAAAAACCCCAGAAAACGTCATGTGAGTGAAGAGATGTCACTGTCTGTGGTCTTGGAGA
ACTAGTCTCGTAGCTGAGGGGAGGGCTCCCTCTGGTCTGGGGCACTGGCACCCACAGCAG
GACTTCTGCCAGGACTGAATAAAGTGTATTTGCCCCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGAAAAACAACAACAAAAAAAAAAGACAA
TGAAAAACCCCAGAAAACGTCATGTGAGTGAAGAGATGTCACTGTCTGTGGTCTTGGAGA
ACTAGTCTCGTAGCTGAGGGGAGGGCTCCCTCTGGTCTGGGGCACTGGCACCCACAGCAG
GACTTCTGCCAGGACTGAATAAAGTGTATTTGCCCCAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               111-217, - strand, RNAz p=0.551283
               

               
               112-217, + strand, RNAz p=0.792499

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-217, - strand, RNAz p=0.551283
               

               
               112-217, + strand, RNAz p=0.792499

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               7-217, gnl|bosTau2|chr13 (41963773-41963564)
               

               
               7-217, gnl|canFam2|chr24 (23482653-23482247)
               

               
               7-217, gnl|dasNov1|scaffold_50369 (40092-40485)
               

               
               7-217, gnl|echTel1|scaffold_295540 (57895-58284)
               

               
               7-217, gnl|hg17|chr20 (256939-257316)
               

               
               7-217, gnl|Hg17|chr20 (257160-257373)
               

               
               7-217, gnl|mm7|chr2 (152136239-152135817)
               

               
               7-217, gnl|Mm7|chr2 (152136001-152135759)
               

               
               7-217, gnl|monDom2|scaffold_38 (2378290-2378653)
               

               
               7-217, gnl|panTro1|chr21 (331475-331863)
               

               
               7-217, gnl|rheMac2|chr10 (33572114-33572511)
               

               
               7-217, gnl|rn3|chr3 (142618970-142618561)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-217, gnl|bosTau2|chr13 (41963773-41963564)
               

               
               7-217, gnl|canFam2|chr24 (23482653-23482247)
               

               
               7-217, gnl|dasNov1|scaffold_50369 (40092-40485)
               

               
               7-217, gnl|echTel1|scaffold_295540 (57895-58284)
               

               
               7-217, gnl|hg17|chr20 (256939-257316)
               

               
               7-217, gnl|Hg17|chr20 (257160-257373)
               

               
               7-217, gnl|mm7|chr2 (152136239-152135817)
               

               
               7-217, gnl|Mm7|chr2 (152136001-152135759)
               

               
               7-217, gnl|monDom2|scaffold_38 (2378290-2378653)
               

               
               7-217, gnl|panTro1|chr21 (331475-331863)
               

               
               7-217, gnl|rheMac2|chr10 (33572114-33572511)
               

               
               7-217, gnl|rn3|chr3 (142618970-142618561)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fce (0.543183)
               

               
               amn (0.417711)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               amn (0.417711)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               mcp (0.170648)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	111-217, - strand, RNAz p=0.551283
	112-217, + strand, RNAz p=0.792499

	7-217, gnl\|bosTau2\|chr13 (41963773-41963564)
	7-217, gnl\|canFam2\|chr24 (23482653-23482247)
	7-217, gnl\|dasNov1\|scaffold_50369 (40092-40485)
	7-217, gnl\|echTel1\|scaffold_295540 (57895-58284)
	7-217, gnl\|hg17\|chr20 (256939-257316)
	7-217, gnl\|Hg17\|chr20 (257160-257373)
	7-217, gnl\|mm7\|chr2 (152136239-152135817)
	7-217, gnl\|Mm7\|chr2 (152136001-152135759)
	7-217, gnl\|monDom2\|scaffold_38 (2378290-2378653)
	7-217, gnl\|panTro1\|chr21 (331475-331863)
	7-217, gnl\|rheMac2\|chr10 (33572114-33572511)
	7-217, gnl\|rn3\|chr3 (142618970-142618561)

	fce (0.543183)
	amn (0.417711)
	ecc (0.23007)
	ece (0.229305)
	mcp (0.170648)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)