Ss1.1-rfce09c_n22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCCATCAAGTCGGCGCGGTACCGAGGGCAGTACAGCAGCTACCCCATCAAGCTCTTCT ACACGTCCAACATCCCCATCATCCTGCAGTCGGCCCTCGTGTCCAACCTGTATGTCATCT CCCAGATGCTGTCCGTTCGATTTAGTGGCAACTTTTTAGTCAATTTGCTGGGCCAGTGGG CTGATGTCAGCGGGGGAGGTCCTGCTCGGTCTTACCCAGTGGGGGGGCTTTGTTACTACC TGTCCCCCCCGGAGTCCATGGGCGCCATATTCGAGGATCCTGTCCACGTGGTGGTTTATA TCATCTTCATGCTGGGGTCCTGCGCGTTCTTTTCTAAGACCTGGATAGAGGTGTCTGGTT CCTCCGCCAAAGATGTGGCGAAGCAGCTTAAGGAACAGCAGATGGTGATGAGGGGCCACA GGGACACCTCCATGGTTCACGAGCTCAACAGGTACATCCCCACGGCCGCTGCGTTTGGGG GTTTGTGCATCGGCGCCCTGTCGGTCTTAGCCGACTTCCTCGGGGCCATCGGCTCTGGCA CCGGAATCCTGCTTGCAGTCACTATTATTTATCAGTATTTTGAAATATTTGTTAAGGAGC AGGCTGAAGTTGGCGGGATGGGTGCTTTGTTTTTCTAAATGTTGCGATATTTCTTTGTGT GTGAAAGGGAAGGTATTTTGACGCATTGTTTTTGTCAAGTAATGCGGTCCCCCTCTTCTC CTGCCACAGTTCGTTTTCCAGGGCGAAGCGTCCCATGTCTGAAATGGGCACGGAGCTGAG CCCGTGTGCAGCATGAGTACCAGCTGCCTTAAAACTCAAGTTTACATTAGTCAGTCAGAA ACATCCACGCAGTGTTGCTTGTGATGCTGGAAAGCGCTGTACCCGCCTCGCCGTGTTCAG CTGTGACAGCGAGACGGTGCCGGGGATCAGTTCTGCACACTCATCCCAGCACTCCCCCTC CCCTAACCCGTCTGAAAATACACGCCCTTCCAGTTGCCACTTGCCCGTAGCCTGGAGCTT ATTTAAGGAGTTCTGGAACATTTATATCGAATCCGTACTTGAGATATAATCACTGTTCGT ACTCTTTAAACTCACAGTGTCCCCGTTCCCACGTCCCCCCTTTTATTGGTTCCTCCTCAA ATCCAGCTTTTAGTGTCACCAGTGTCACGTCTGTTCCCAGAAGCAAGTGCTTGTATGAAC AGTTTCCCATCCCCCTTCCTTCCCAGTGACAGCAGGTAGTGCTGTTGGACTGTATCGGCT GTGCCTTCCAACGCCAACAAGTCGCTTGAGTCTCTTTCAAGACACCATGCCCCCATTTTT TTTTTTAAATCCCTAAAGCAAAGATCTAATGCTCCAGCAGTGTCTCTAGTTGAGTGGGGA GAAAGTGAGTAACTCATGCTAGGAGTTTGTGTAAGTTGTTGTACTTGACAGCAGCAACAT GAGTGTAAACAGTAGACAATAAAGTTTTATTTAATAAAAAAAAAAAAAGTGTTAGAAAAA TACAATTTGATATTAAATGATGTCTAAGATTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCCATCAAGTCGGCGCGGTACCGAGGGCAGTACAGCAGCTACCCCATCAAGCTCTTCT ACACGTCCAACATCCCCATCATCCTGCAGTCGGCCCTCGTGTCCAACCTGTATGTCATCT CCCAGATGCTGTCCGTTCGATTTAGTGGCAACTTTTTAGTCAATTTGCTGGGCCAGTGGG CTGATGTCAGCGGGGGAGGTCCTGCTCGGTCTTACCCAGTGGGGGGGCTTTGTTACTACC TGTCCCCCCCGGAGTCCATGGGCGCCATATTCGAGGATCCTGTCCACGTGGTGGTTTATA TCATCTTCATGCTGGGGTCCTGCGCGTTCTTTTCTAAGACCTGGATAGAGGTGTCTGGTT CCTCCGCCAAAGATGTGGCGAAGCAGCTTAAGGAACAGCAGATGGTGATGAGGGGCCACA GGGACACCTCCATGGTTCACGAGCTCAACAGGTACATCCCCACGGCCGCTGCGTTTGGGG GTTTGTGCATCGGCGCCCTGTCGGTCTTAGCCGACTTCCTCGGGGCCATCGGCTCTGGCA CCGGAATCCTGCTTGCAGTCACTATTATTTATCAGTATTTTGAAATATTTGTTAAGGAGC AGGCTGAAGTTGGCGGGATGGGTGCTTTGTTTTTCTAAATGTTGCGATATTTCTTTGTGT GTGAAAGGGAAGGTATTTTGACGCATTGTTTTTGTCAAGTAATGCGGTCCCCCTCTTCTC CTGCCACAGTTCGTTTTCCAGGGCGAAGCGTCCCATGTCTGAAATGGGCACGGAGCTGAG CCCGTGTGCAGCATGAGTACCAGCTGCCTTAAAACTCAAGTTTACATTAGTCAGTCAGAA ACATCCACGCAGTGTTGCTTGTGATGCTGGAAAGCGCTGTACCCGCCTCGCCGTGTTCAG CTGTGACAGCGAGACGGTGCCGGGGATCAGTTCTGCACACTCATCCCAGCACTCCCCCTC CCCTAACCCGTCTGAAAATACACGCCCTTCCAGTTGCCACTTGCCCGTAGCCTGGAGCTT ATTTAAGGAGTTCTGGAACATTTATATCGAATCCGTACTTGAGATATAATCACTGTTCGT ACTCTTTAAACTCACAGTGTCCCCGTTCCCACGTCCCCCCTTTTATTGGTTCCTCCTCAA ATCCAGCTTTTAGTGTCACCAGTGTCACGTCTGTTCCCAGAAGCAAGTGCTTGTATGAAC AGTTTCCCATCCCCCTTCCTTCCCAGTGACAGCAGGTAGTGCTGTTGGACTGTATCGGCT GTGCCTTCCAACGCCAACAAGTCGCTTGAGTCTCTTTCAAGACACCATGCCCCCATTTTT TTTTTTAAATCCCTAAAGCAAAGATCTAATGCTCCAGCAGTGTCTCTAGTTGAGTGGGGA GAAAGTGAGTAACTCATGCTAGGAGTTTGTGTAAGTTGTTGTACTTGACAGCAGCAACAT GAGTGTAAACAGTAGACAATAAAGTTTTATTTAATAAAAAAAAAAAAAGTGTTAGAAAAA TACAATTTGATATTAAATGATGTCTAAGATTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-183, gnl|bosTau2|chr22 (47083081-47082899) | |
| 1-183, gnl|canFam2|chr20 (5087188-5087415) | |
| 1-183, gnl|danRer3|chrUn (106205923-106205707) | |
| 1-183, gnl|dasNov1|scaffold_39253 (12203-12435) | |
| 1-183, gnl|echTel1|scaffold_169947 (4739-4510) | |
| 1-183, gnl|fr1|chrUn (57791456-57791235) | |
| 1-183, gnl|galGal2|chr12 (9564693-9564460) | |
| 1-183, gnl|hg17|chr3 (129268468-129268699) | |
| 1-183, gnl|Hg17|chr3 (129268511-129268693) | |
| 1-183, gnl|loxAfr1|scaffold_8280 (37980-38214) | |
| 1-183, gnl|mm7|chr6 (88582491-88582260) | |
| 1-183, gnl|Mm7|chr6 (88582446-88582264) | |
| 1-183, gnl|monDom2|scaffold_5 (46622949-46623181) | |
| 1-183, gnl|oryCun1|scaffold_198424 (190941-190709) | |
| 1-183, gnl|panTro1|chr2 (131153026-131153257) | |
| 1-183, gnl|rheMac2|chr11 (86782799-86782568) | |
| 1-183, gnl|rn3|chr4 (122846091-122845863) | |
| 1-183, gnl|tetNig1|chr11 (1781106-1781317) | |
| 1-183, gnl|xenTro1|scaffold_72 (781798-782019) | |
| 195-377, gnl|bosTau2|chr22 (47082641-47082459) | |
| 195-377, gnl|canFam2|chr20 (5087666-5087884) | |
| 195-377, gnl|danRer3|chrUn (106204365-106204148) | |
| 195-377, gnl|dasNov1|scaffold_39253 (13103-13320) | |
| 195-377, gnl|echTel1|scaffold_169947 (4331-4117) | |
| 195-377, gnl|fr1|chrUn (57791147-57790948) | |
| 195-377, gnl|galGal2|chr12 (9564094-9563876) | |
| 195-377, gnl|hg17|chr3 (129268942-129269161) | |
| 195-377, gnl|Hg17|chr3 (129268974-129269156) | |
| 195-377, gnl|loxAfr1|scaffold_8280 (38428-38646) | |
| 195-377, gnl|mm7|chr6 (88582046-88581828) | |
| 195-377, gnl|Mm7|chr6 (88582013-88581831) | |
| 195-377, gnl|monDom2|scaffold_5 (46623490-46623708) | |
| 195-377, gnl|oryCun1|scaffold_204444 (67782-67563) | |
| 195-377, gnl|panTro1|chr2 (131153500-131153719) | |
| 195-377, gnl|rheMac2|chr11 (86782326-86782107) | |
| 195-377, gnl|rn3|chr4 (122845646-122845428) | |
| 195-377, gnl|tetNig1|chr11 (1781365-1781584) | |
| 195-377, gnl|xenTro1|scaffold_72 (782190-782338) | |
| 444-636, gnl|bosTau2|chr22 (47081012-47080820) | |
| 444-636, gnl|Hg17|chr3 (129271009-129271201) | |
| 444-636, gnl|Mm7|chr6 (88580394-88580202) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-183, gnl|bosTau2|chr22 (47083081-47082899) | |
| 1-183, gnl|canFam2|chr20 (5087188-5087415) | |
| 1-183, gnl|danRer3|chrUn (106205923-106205707) | |
| 1-183, gnl|dasNov1|scaffold_39253 (12203-12435) | |
| 1-183, gnl|echTel1|scaffold_169947 (4739-4510) | |
| 1-183, gnl|fr1|chrUn (57791456-57791235) | |
| 1-183, gnl|galGal2|chr12 (9564693-9564460) | |
| 1-183, gnl|hg17|chr3 (129268468-129268699) | |
| 1-183, gnl|Hg17|chr3 (129268511-129268693) | |
| 1-183, gnl|loxAfr1|scaffold_8280 (37980-38214) | |
| 1-183, gnl|mm7|chr6 (88582491-88582260) | |
| 1-183, gnl|Mm7|chr6 (88582446-88582264) | |
| 1-183, gnl|monDom2|scaffold_5 (46622949-46623181) | |
| 1-183, gnl|oryCun1|scaffold_198424 (190941-190709) | |
| 1-183, gnl|panTro1|chr2 (131153026-131153257) | |
| 1-183, gnl|rheMac2|chr11 (86782799-86782568) | |
| 1-183, gnl|rn3|chr4 (122846091-122845863) | |
| 1-183, gnl|tetNig1|chr11 (1781106-1781317) | |
| 1-183, gnl|xenTro1|scaffold_72 (781798-782019) | |
| 195-377, gnl|bosTau2|chr22 (47082641-47082459) | |
| 195-377, gnl|canFam2|chr20 (5087666-5087884) | |
| 195-377, gnl|danRer3|chrUn (106204365-106204148) | |
| 195-377, gnl|dasNov1|scaffold_39253 (13103-13320) | |
| 195-377, gnl|echTel1|scaffold_169947 (4331-4117) | |
| 195-377, gnl|fr1|chrUn (57791147-57790948) | |
| 195-377, gnl|galGal2|chr12 (9564094-9563876) | |
| 195-377, gnl|hg17|chr3 (129268942-129269161) | |
| 195-377, gnl|Hg17|chr3 (129268974-129269156) | |
| 195-377, gnl|loxAfr1|scaffold_8280 (38428-38646) | |
| 195-377, gnl|mm7|chr6 (88582046-88581828) | |
| 195-377, gnl|Mm7|chr6 (88582013-88581831) | |
| 195-377, gnl|monDom2|scaffold_5 (46623490-46623708) | |
| 195-377, gnl|oryCun1|scaffold_204444 (67782-67563) | |
| 195-377, gnl|panTro1|chr2 (131153500-131153719) | |
| 195-377, gnl|rheMac2|chr11 (86782326-86782107) | |
| 195-377, gnl|rn3|chr4 (122845646-122845428) | |
| 195-377, gnl|tetNig1|chr11 (1781365-1781584) | |
| 195-377, gnl|xenTro1|scaffold_72 (782190-782338) | |
| 444-636, gnl|bosTau2|chr22 (47081012-47080820) | |
| 444-636, gnl|Hg17|chr3 (129271009-129271201) | |
| 444-636, gnl|Mm7|chr6 (88580394-88580202) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |