Ss1.1-rfce12c_l6.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCCCCGCGCCGCGCAGCTCTCATCGTTCCGAGCGCGTAGTTTGCAGTTTGTTCTTCCT ACCATTTAGCAGCATGATAAGTGCCAGCCGAGCCGCAACAGCCCGTCTTGTTGGTGCTGC AGCCTCCCGGGGCCCCACTGCCGCTCGCCACCAGGATGGCTGGAATGGCCTTAGTCATGA GGCTTTTAGAATTGTTTCAAGGCGGGACTATGCATCAGAAGCAATCAAGGGAGCAGTCGT TGGTATTGATTTGGGTACTACCAACTCTTGTGTGGCAGTTATGGAAGGTAAACAAGCAAA GGTGCTGGAGAATGCTGAAGGTGCCAGAACCACCCCTTCAGTTGTGGCCTTTACAGCAGA TGGTGAGCGACTTGTTGGCATGCCAGCCAAGCGACAAGCTGTCACCAACCCAAACAACAC TTTCTATGCTACCAAGCGTCTCATAGGCCGGCGATATGATGACCCTGAAGTACAGAAAGA CATTAAAAATGTTCCTTTTAAAATTGTCCGTGCTTCCAATGGCGATGCTTGGGTTGAAGC CCATGGAAAGCTCTATTCTCCGAGTCAGATTGGAGCATTTGTGTTGATGAAGATGAAAGA GACTGCAGAAAATTACTTGGGGCATACAGCAAAAAATGCTGTGATCACGGTCCCAGCTTA TTTCAATGACTCTCAGAGACAGGCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGT GCTTCGGGTAATTAATGAGCCCACAGCTGCCGCTCTGGCCTATGGTTTAGACAAATCAGA AGACAAAATCATTGCTGTATATGATTTAGGTGGTGGAACTTTTGATATTTCTATACTGGA AATTCAGAAAGGAGTGTTTGAGGTGAAGTCAACCAATGGAGACACTTTCTTAGGTGGTGA AGACTTTGACCAGGCCTTGCTGCGTTACATTGTGAAGGAGTTCAAGAGAGAGACGGGGGT TGATTTGACTAAAGACAACATGGCCCTTCAGAGGGTTCGGGAAGCTGCTGAGAAAGCCAA GTGTGAACTCTCTTCATCTGTGCAGACTGACATTAACTTGCCATACCTTACAATGGATGC TTCTGGACCCAAGCATTTGAATATGAAACTAACCCGGGCTCAGTTTGAGGGGATTGTTAC TGATCTAATCAAAAGGACCATCGCCCCATGCCAGAAAGCCATGCAGGATGCAGAAGTCAG CAAGAGTGACATAGGCGAAGTGATTCTTGTTGGTGGAATGACAAGGATGCCCAAGGTTCA GCAGACTGTGCAGGATCTCTTTGGCCGAGCCCCAAGTAAAGCTGTTAATCCTGATGAGGC TGTGGCCATTGGAGCTGCCATTCAGGGAGGTGTGTTGGCTGGTGATGTCACAGATGTGCT GCTCCTGGATGTCACTCCCTTGTCTCTGGGTATTGAGACTCTGGGAGGTGTCTTCACAAA GCTTATCAACAGGAACACCACCATTCCAACCAAGAAGAGCCAGGTGTTTTCTACAGCTGC TGATGGACAGACTCAAGTGGAGATTAAAGTATGTCAGGGTGAGAGAGAAATGGCTGGAGA CAACAAGCTTCTTGGACAGTTTACTTTGGTTGGAATTCCCCCAGCCCCTCGTGGAGTCCC TCAGATTGAAGTTACATTCGACATTGACGCCAATGGGATTGTACATGTTTCTGCCAAAGA TAAGGGTACAGGACGAGAGCAGCAGATTGTGATCCAGTCTTCTGGTGGGCTAAGCAAAGA TGATATTGAAAATATGGTTAAAAATGCAGAGAAGTATGCTGAGGAAGACCGGCGCAAGAA GGAACGAGTCGAAGCAGTAAATATGGCTGAAGGAATTATTCATGACACAGAATCTAAGAT GGAAGAATTCAAGGACCAATTGCCTGCTGATGAGTGCAACAAGCTAAAAGAAGAGATTTC CAAAATGAGGGAGCTCCTCTCTAGAAAAGACAGTGAAACAGGAGAAAATATAAGGCAGGC AGCATCTTCCCTTCAGCAAGCATCATTGAAGCTCTTCGAAATGGCATACAAAAAGATGGC ATCTGAGCGAGAAGGCTCTGGAAGTTCTGGCTCTGGAGAGCAAAAGGAAGATCAAAAGGA AGAGAAACAGTAACAGCAGTAAACTTTGAAAGTGAAAGGACAACATATATGATGCTTGGG AGTGAAGATTTCCTGAGCAGAAATGAGCAAACTTCAGTCTTCTTACTGTGTTTTTGCAGT ATTCTATATATAATTTCCTTAATATGTAAATTTAGTGACCATTAGCTAATGATGATTTAA TGAGTGAAAACTCCACCAGTACAAAATTCTGTCCCTAGCCTGTCGTCATTTTTCAGCTGC ATGTAAATGGGGGGAAGATGGTTTATTGATCATTCTGAAGATTCAACATTTTTTCAAAGG GTGAAACCATTTCACACACAGTGAAGGCAGTCAGGCGTAGATTTGGAATGAGACCATAAG CAAATGGGATCCTCCTAGTTACCTGAGTATCGCTGTACCTGTGTATGTGTATCTGGGGTT CTTCAGTGGAGGCCTTGCAAGGCAAGCCAGCTGTGCCATGTTGGGAAGTAGGGCAGGGGA AGCTAGATACTGGAGGTCTAAGTAGCTATTTATGGTTAGGTCCAGCTTTGAAAACAAGTC TCCCAAACTTTCCTAAGGCATACTTTTCTAGCTACCCTGTGGCCTGTGTCTGGCACCTCT GTCCTTGATGATTGTTCTTTTGGATCCATTCAGGATTTTTAATAAAGAGGAAAAGCAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCCCCGCGCCGCGCAGCTCTCATCGTTCCGAGCGCGTAGTTTGCAGTTTGTTCTTCCT ACCATTTAGCAGCATGATAAGTGCCAGCCGAGCCGCAACAGCCCGTCTTGTTGGTGCTGC AGCCTCCCGGGGCCCCACTGCCGCTCGCCACCAGGATGGCTGGAATGGCCTTAGTCATGA GGCTTTTAGAATTGTTTCAAGGCGGGACTATGCATCAGAAGCAATCAAGGGAGCAGTCGT TGGTATTGATTTGGGTACTACCAACTCTTGTGTGGCAGTTATGGAAGGTAAACAAGCAAA GGTGCTGGAGAATGCTGAAGGTGCCAGAACCACCCCTTCAGTTGTGGCCTTTACAGCAGA TGGTGAGCGACTTGTTGGCATGCCAGCCAAGCGACAAGCTGTCACCAACCCAAACAACAC TTTCTATGCTACCAAGCGTCTCATAGGCCGGCGATATGATGACCCTGAAGTACAGAAAGA CATTAAAAATGTTCCTTTTAAAATTGTCCGTGCTTCCAATGGCGATGCTTGGGTTGAAGC CCATGGAAAGCTCTATTCTCCGAGTCAGATTGGAGCATTTGTGTTGATGAAGATGAAAGA GACTGCAGAAAATTACTTGGGGCATACAGCAAAAAATGCTGTGATCACGGTCCCAGCTTA TTTCAATGACTCTCAGAGACAGGCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGT GCTTCGGGTAATTAATGAGCCCACAGCTGCCGCTCTGGCCTATGGTTTAGACAAATCAGA AGACAAAATCATTGCTGTATATGATTTAGGTGGTGGAACTTTTGATATTTCTATACTGGA AATTCAGAAAGGAGTGTTTGAGGTGAAGTCAACCAATGGAGACACTTTCTTAGGTGGTGA AGACTTTGACCAGGCCTTGCTGCGTTACATTGTGAAGGAGTTCAAGAGAGAGACGGGGGT TGATTTGACTAAAGACAACATGGCCCTTCAGAGGGTTCGGGAAGCTGCTGAGAAAGCCAA GTGTGAACTCTCTTCATCTGTGCAGACTGACATTAACTTGCCATACCTTACAATGGATGC TTCTGGACCCAAGCATTTGAATATGAAACTAACCCGGGCTCAGTTTGAGGGGATTGTTAC TGATCTAATCAAAAGGACCATCGCCCCATGCCAGAAAGCCATGCAGGATGCAGAAGTCAG CAAGAGTGACATAGGCGAAGTGATTCTTGTTGGTGGAATGACAAGGATGCCCAAGGTTCA GCAGACTGTGCAGGATCTCTTTGGCCGAGCCCCAAGTAAAGCTGTTAATCCTGATGAGGC TGTGGCCATTGGAGCTGCCATTCAGGGAGGTGTGTTGGCTGGTGATGTCACAGATGTGCT GCTCCTGGATGTCACTCCCTTGTCTCTGGGTATTGAGACTCTGGGAGGTGTCTTCACAAA GCTTATCAACAGGAACACCACCATTCCAACCAAGAAGAGCCAGGTGTTTTCTACAGCTGC TGATGGACAGACTCAAGTGGAGATTAAAGTATGTCAGGGTGAGAGAGAAATGGCTGGAGA CAACAAGCTTCTTGGACAGTTTACTTTGGTTGGAATTCCCCCAGCCCCTCGTGGAGTCCC TCAGATTGAAGTTACATTCGACATTGACGCCAATGGGATTGTACATGTTTCTGCCAAAGA TAAGGGTACAGGACGAGAGCAGCAGATTGTGATCCAGTCTTCTGGTGGGCTAAGCAAAGA TGATATTGAAAATATGGTTAAAAATGCAGAGAAGTATGCTGAGGAAGACCGGCGCAAGAA GGAACGAGTCGAAGCAGTAAATATGGCTGAAGGAATTATTCATGACACAGAATCTAAGAT GGAAGAATTCAAGGACCAATTGCCTGCTGATGAGTGCAACAAGCTAAAAGAAGAGATTTC CAAAATGAGGGAGCTCCTCTCTAGAAAAGACAGTGAAACAGGAGAAAATATAAGGCAGGC AGCATCTTCCCTTCAGCAAGCATCATTGAAGCTCTTCGAAATGGCATACAAAAAGATGGC ATCTGAGCGAGAAGGCTCTGGAAGTTCTGGCTCTGGAGAGCAAAAGGAAGATCAAAAGGA AGAGAAACAGTAACAGCAGTAAACTTTGAAAGTGAAAGGACAACATATATGATGCTTGGG AGTGAAGATTTCCTGAGCAGAAATGAGCAAACTTCAGTCTTCTTACTGTGTTTTTGCAGT ATTCTATATATAATTTCCTTAATATGTAAATTTAGTGACCATTAGCTAATGATGATTTAA TGAGTGAAAACTCCACCAGTACAAAATTCTGTCCCTAGCCTGTCGTCATTTTTCAGCTGC ATGTAAATGGGGGGAAGATGGTTTATTGATCATTCTGAAGATTCAACATTTTTTCAAAGG GTGAAACCATTTCACACACAGTGAAGGCAGTCAGGCGTAGATTTGGAATGAGACCATAAG CAAATGGGATCCTCCTAGTTACCTGAGTATCGCTGTACCTGTGTATGTGTATCTGGGGTT CTTCAGTGGAGGCCTTGCAAGGCAAGCCAGCTGTGCCATGTTGGGAAGTAGGGCAGGGGA AGCTAGATACTGGAGGTCTAAGTAGCTATTTATGGTTAGGTCCAGCTTTGAAAACAAGTC TCCCAAACTTTCCTAAGGCATACTTTTCTAGCTACCCTGTGGCCTGTGTCTGGCACCTCT GTCCTTGATGATTGTTCTTTTGGATCCATTCAGGATTTTTAATAAAGAGGAAAAGCAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 516-628, - strand, RNAz p=0.573173 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 516-628, - strand, RNAz p=0.573173 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-155, gnl|bosTau2|chr7 (35016937-35016781) | |
| 1-155, gnl|Hg17|chr5 (137938978-137938825) | |
| 1-155, gnl|Mm7|chr18 (35330424-35330270) | |
| 228-1021, gnl|bosTau2|chr3 (19185639-19184833) | |
| 228-1021, gnl|Hg17|chr1 (158307516-158308322) | |
| 228-1021, gnl|Mm7|chr17 (33056091-33055285) | |
| 240-945, gnl|bosTau2|chr10 (51572772-51572049) | |
| 240-945, gnl|Hg17|chr14 (64077343-64078066) | |
| 240-945, gnl|Mm7|chr12 (74362742-74363465) | |
| 1112-1809, gnl|bosTau2|chr10 (51571894-51571179) | |
| 1112-1809, gnl|Hg17|chr14 (64078221-64078936) | |
| 1112-1809, gnl|Mm7|chr12 (74363620-74364335) | |
| 1893-2035, gnl|bosTau2|chr7 (35002323-35002181) | |
| 1893-2035, gnl|canFam2|chr11 (29142466-29142326) | |
| 1893-2035, gnl|danRer3|chr14 (9885556-9885414) | |
| 1893-2035, gnl|dasNov1|scaffold_11799 (3310-3451) | |
| 1893-2035, gnl|echTel1|scaffold_321093 (30242-30337) | |
| 1893-2035, gnl|fr1|chrUn (236984920-236985062) | |
| 1893-2035, gnl|galGal2|chr13 (6755866-6755750) | |
| 1893-2035, gnl|hg17|chr2 (222653774-222653915) | |
| 1893-2035, gnl|Hg17|chr5 (137920182-137920040) | |
| 1893-2035, gnl|loxAfr1|scaffold_6116 (84129-83989) | |
| 1893-2035, gnl|Mm7|chr18 (35314827-35314685) | |
| 1893-2035, gnl|mm7|chrX (55971745-55971615) | |
| 1893-2035, gnl|monDom2|scaffold_51 (3579703-3579845) | |
| 1893-2035, gnl|oryCun1|scaffold_178125 (67592-67732) | |
| 1893-2035, gnl|panTro1|chr13 (113221721-113221863) | |
| 1893-2035, gnl|rheMac2|chr12 (85837246-85837388) | |
| 1893-2035, gnl|rn3|chr4 (187159980-187159841) | |
| 1893-2035, gnl|tetNig1|chrUn_random (125369648-125369790) | |
| 1893-2035, gnl|xenTro1|scaffold_10 (463066-462926) | |
| 2198-2361, gnl|bosTau2|chr28 (18514505-18514680) | |
| 2198-2361, gnl|Hg17|chr5 (137919529-137919382) | |
| 2198-2361, gnl|Mm7|chr18 (35314319-35314178) | |
| 2391-2760, gnl|bosTau2|chr17 (16245182-16244820) | |
| 2391-2760, gnl|Hg17|chr2 (222654297-222654676) | |
| 2391-2760, gnl|Mm7|chr18 (35314113-35313751) | |
| 2439-2721, gnl|bosTau2|chr13 (47963296-47963008) | |
| 2439-2721, gnl|Hg17|chr5 (137919269-137918957) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-155, gnl|bosTau2|chr7 (35016937-35016781) | |
| 1-155, gnl|Hg17|chr5 (137938978-137938825) | |
| 1-155, gnl|Mm7|chr18 (35330424-35330270) | |
| 228-1021, gnl|bosTau2|chr3 (19185639-19184833) | |
| 228-1021, gnl|Hg17|chr1 (158307516-158308322) | |
| 228-1021, gnl|Mm7|chr17 (33056091-33055285) | |
| 240-945, gnl|bosTau2|chr10 (51572772-51572049) | |
| 240-945, gnl|Hg17|chr14 (64077343-64078066) | |
| 240-945, gnl|Mm7|chr12 (74362742-74363465) | |
| 1112-1809, gnl|bosTau2|chr10 (51571894-51571179) | |
| 1112-1809, gnl|Hg17|chr14 (64078221-64078936) | |
| 1112-1809, gnl|Mm7|chr12 (74363620-74364335) | |
| 1893-2035, gnl|bosTau2|chr7 (35002323-35002181) | |
| 1893-2035, gnl|canFam2|chr11 (29142466-29142326) | |
| 1893-2035, gnl|danRer3|chr14 (9885556-9885414) | |
| 1893-2035, gnl|dasNov1|scaffold_11799 (3310-3451) | |
| 1893-2035, gnl|echTel1|scaffold_321093 (30242-30337) | |
| 1893-2035, gnl|fr1|chrUn (236984920-236985062) | |
| 1893-2035, gnl|galGal2|chr13 (6755866-6755750) | |
| 1893-2035, gnl|hg17|chr2 (222653774-222653915) | |
| 1893-2035, gnl|Hg17|chr5 (137920182-137920040) | |
| 1893-2035, gnl|loxAfr1|scaffold_6116 (84129-83989) | |
| 1893-2035, gnl|Mm7|chr18 (35314827-35314685) | |
| 1893-2035, gnl|mm7|chrX (55971745-55971615) | |
| 1893-2035, gnl|monDom2|scaffold_51 (3579703-3579845) | |
| 1893-2035, gnl|oryCun1|scaffold_178125 (67592-67732) | |
| 1893-2035, gnl|panTro1|chr13 (113221721-113221863) | |
| 1893-2035, gnl|rheMac2|chr12 (85837246-85837388) | |
| 1893-2035, gnl|rn3|chr4 (187159980-187159841) | |
| 1893-2035, gnl|tetNig1|chrUn_random (125369648-125369790) | |
| 1893-2035, gnl|xenTro1|scaffold_10 (463066-462926) | |
| 2198-2361, gnl|bosTau2|chr28 (18514505-18514680) | |
| 2198-2361, gnl|Hg17|chr5 (137919529-137919382) | |
| 2198-2361, gnl|Mm7|chr18 (35314319-35314178) | |
| 2391-2760, gnl|bosTau2|chr17 (16245182-16244820) | |
| 2391-2760, gnl|Hg17|chr2 (222654297-222654676) | |
| 2391-2760, gnl|Mm7|chr18 (35314113-35313751) | |
| 2439-2721, gnl|bosTau2|chr13 (47963296-47963008) | |
| 2439-2721, gnl|Hg17|chr5 (137919269-137918957) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| sug (1.14562) | |
| hea (1.02249) | |
| lin (0.728014) | |
| spc (0.680195) | |
| ssp (0.677599) | |
| vin (0.665115) | |
| ldo (0.582016) | |
| fce (0.543183) | |
| pro (0.512033) | |
| tbr (0.462535) | |
| cty (0.41632) | |
| ste (0.405625) | |
| aor (0.390549) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| med (0.348756) | |
| nco (0.323468) | |
| fco (0.314416) | |
| sme (0.305437) | |
| fat (0.294855) | |
| cte (0.29274) | |
| csk (0.281492) | |
| ute (0.265569) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| fli (0.202881) | |
| sag (0.182715) | |
| sto (0.179824) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cki (0.165235) | |
| cje (0.165235) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (1.14562) | |
| hea (1.02249) | |
| lin (0.728014) | |
| spc (0.680195) | |
| ssp (0.677599) | |
| vin (0.665115) | |
| ldo (0.582016) | |
| fce (0.543183) | |
| pro (0.512033) | |
| tbr (0.462535) | |
| cty (0.41632) | |
| ste (0.405625) | |
| aor (0.390549) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| med (0.348756) | |
| nco (0.323468) | |
| fco (0.314416) | |
| sme (0.305437) | |
| fat (0.294855) | |
| cte (0.29274) | |
| csk (0.281492) | |
| ute (0.265569) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| fli (0.202881) | |
| sag (0.182715) | |
| sto (0.179824) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cki (0.165235) | |
| cje (0.165235) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ova (0.129132) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) |