Non-Coding RNA Search

Ss1.1-rfce12c_n6.5

Sequence:


               
               TCTGGTTTTGTTCCTAGTGAGTGAGTACAGCCCTTACACATACATATTTGTGAGTTGCAC
TGGGGAAAGAGGGAGTGCCAGTTTAATAGCTATGGCTGGTGGATTCTGAATTCTTATTTG
ACGTTTGAACCAGGAGTCTCTACAAAGGGGCTGCTTTGTGGTAAGTTTTCCTCTGACCAG
GTCCAAGACCCAGAAATGGTCTCTGACCAGAAATGACCATTTCTTCCTCTGGCTCAAAGT
CTTTCGCTGGAGAAAAGGGTTGTATTCTGTTATTTAATCCAGAAAACCAATTCTAGCAAA
GTATTGGTGTTCTTTCCATCTGCAGGATGCAATATAGGCTGATTGTGTTTAAAAATTCAA
AGCACCCCAAACCAAGTCCCTCCCACCTAATAAGTATCTGGTGGTGGGTCACACTCTTGA
CCATAGATTTTTTTTTGCTCGGTTTTAACACAGTCTTCTGTTGAGTCTTATCTGCAGAAG
TGAACTTTAAAGGTTTTTTTATTCATGTACTGGTTACATTTTAGTATATAGATAGGTCAT
CTGTTACAAATACCTGCTTCAAGTTCAGCAAGGACAGATGAGCACATTATTAAGACATTT
AGTAGTATTGCTACTTGGAAAGATAATCTTTTATGTGAGACCTTAGGTCTTTGTTCTAGC
TGACAAAAAGCAAATCCCCGGGTTTCTGGTGTGAAGTTAGGAGGGCAGAAACTGTTCTAA
GATTCAGGTGAATCACTTGAATTCTTTCAGCTGTCAATGGCTTAGAGAACATCTCTTGGA
CCCAAGCCAACAAGTAGCTTGTTCCTCTCTGTAAGGGCCAGTATGAGGGGCTGCTGTGCG
GACCCATGAAGCCCACTTTGGTGCTAGAAGTGGTCATTTTTTTCCTGAAAACCTCACACC
AGGCTGCATCCTCCTCTTCTATCCCTGGTACCAGGCTTTGTTTACACACTGAGCCACCTT
GATGTGCATCTTCGGGATAGTGTGCTCCTCTCCTGCTGCTCCCTTGCCTGAGGTCTGGTG
GGGCTGCAGTCTCAGGAAGAACTTGGTACTTTGTGGGGACTTCTGTCTTCTCCTTGTGGA
GATTAGTGAAGACTCTGTGAATAAAGCTGCTTCAGCCTCATTTGGCTCTTCATCGGACTA
TATGATCAGAAGCAAAGAACTCTGGTGCTCAAGCTGTGCTTTAGCACTCAGTTCAGGCCA
GAGAAGTAGGTTTGGCCTCATCGATGTTCCTTTATGGGCAGCGTGGCTGCACTGGATTGG
ACAACTGTCCTGTGATGGTTCGAGCCACTGTCATCCAGGACCCAGAAGAACCTGCTGGTT
TGGTATGCCCCATGGGCTTCTTCTTATGTTTTGAAATTGGTCAATGATAAAGAGGAGAGC
CATTTTTCTCCAGCAGTCTGGCCCCAGCTACAGACAAGGAATAAGCTTGGTCATACTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGGTTTTGTTCCTAGTGAGTGAGTACAGCCCTTACACATACATATTTGTGAGTTGCAC
TGGGGAAAGAGGGAGTGCCAGTTTAATAGCTATGGCTGGTGGATTCTGAATTCTTATTTG
ACGTTTGAACCAGGAGTCTCTACAAAGGGGCTGCTTTGTGGTAAGTTTTCCTCTGACCAG
GTCCAAGACCCAGAAATGGTCTCTGACCAGAAATGACCATTTCTTCCTCTGGCTCAAAGT
CTTTCGCTGGAGAAAAGGGTTGTATTCTGTTATTTAATCCAGAAAACCAATTCTAGCAAA
GTATTGGTGTTCTTTCCATCTGCAGGATGCAATATAGGCTGATTGTGTTTAAAAATTCAA
AGCACCCCAAACCAAGTCCCTCCCACCTAATAAGTATCTGGTGGTGGGTCACACTCTTGA
CCATAGATTTTTTTTTGCTCGGTTTTAACACAGTCTTCTGTTGAGTCTTATCTGCAGAAG
TGAACTTTAAAGGTTTTTTTATTCATGTACTGGTTACATTTTAGTATATAGATAGGTCAT
CTGTTACAAATACCTGCTTCAAGTTCAGCAAGGACAGATGAGCACATTATTAAGACATTT
AGTAGTATTGCTACTTGGAAAGATAATCTTTTATGTGAGACCTTAGGTCTTTGTTCTAGC
TGACAAAAAGCAAATCCCCGGGTTTCTGGTGTGAAGTTAGGAGGGCAGAAACTGTTCTAA
GATTCAGGTGAATCACTTGAATTCTTTCAGCTGTCAATGGCTTAGAGAACATCTCTTGGA
CCCAAGCCAACAAGTAGCTTGTTCCTCTCTGTAAGGGCCAGTATGAGGGGCTGCTGTGCG
GACCCATGAAGCCCACTTTGGTGCTAGAAGTGGTCATTTTTTTCCTGAAAACCTCACACC
AGGCTGCATCCTCCTCTTCTATCCCTGGTACCAGGCTTTGTTTACACACTGAGCCACCTT
GATGTGCATCTTCGGGATAGTGTGCTCCTCTCCTGCTGCTCCCTTGCCTGAGGTCTGGTG
GGGCTGCAGTCTCAGGAAGAACTTGGTACTTTGTGGGGACTTCTGTCTTCTCCTTGTGGA
GATTAGTGAAGACTCTGTGAATAAAGCTGCTTCAGCCTCATTTGGCTCTTCATCGGACTA
TATGATCAGAAGCAAAGAACTCTGGTGCTCAAGCTGTGCTTTAGCACTCAGTTCAGGCCA
GAGAAGTAGGTTTGGCCTCATCGATGTTCCTTTATGGGCAGCGTGGCTGCACTGGATTGG
ACAACTGTCCTGTGATGGTTCGAGCCACTGTCATCCAGGACCCAGAAGAACCTGCTGGTT
TGGTATGCCCCATGGGCTTCTTCTTATGTTTTGAAATTGGTCAATGATAAAGAGGAGAGC
CATTTTTCTCCAGCAGTCTGGCCCCAGCTACAGACAAGGAATAAGCTTGGTCATACTTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               670-782, - strand, RNAz p=0.537574
               

               
               823-1016, - strand, RNAz p=0.74333

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               670-782, - strand, RNAz p=0.537574
               

               
               823-1016, - strand, RNAz p=0.74333

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               35-1373, gnl|bosTau2|chr18 (14688633-14687308)
               

               
               35-1373, gnl|Hg17|chr16 (66889005-66890312)
               

               
               35-1373, gnl|Mm7|chr8 (104795732-104797462)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-1373, gnl|bosTau2|chr18 (14688633-14687308)
               

               
               35-1373, gnl|Hg17|chr16 (66889005-66890312)
               

               
               35-1373, gnl|Mm7|chr8 (104795732-104797462)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               ton (0.1755)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ton (0.1755)
               

               
               cly (0.120642)

	670-782, - strand, RNAz p=0.537574
	823-1016, - strand, RNAz p=0.74333

	35-1373, gnl\|bosTau2\|chr18 (14688633-14687308)
	35-1373, gnl\|Hg17\|chr16 (66889005-66890312)
	35-1373, gnl\|Mm7\|chr8 (104795732-104797462)