Non-Coding RNA Search

Ss1.1-rfce13c_a4.5

Sequence:


               
               ATTGGGTGGGGTTAGATGGCAACGGCGTCTTGTAGGGATCAAATTACTCAAGAGCGTTAG
GCACTGTGGGCAACGTTCCCAGGATGCTGCCTTTTCTTTAGGACCAGGCAGAGTATATAT
GCCTGGGATGCACTTGAGCAATGACGTAACATGGCGTCGCCGGGACCTAATTATCCGATC
GCTTCCATGGTAACAGATGGTGAGGAGAGAGGTTGGGAGCTGCAGATATTTTGCTGCCAC
CTCAAACTGCAGGAGTCCGAACGCAGACCTAAAAGAAGCATCATGTTCCATGACTTCATT
TCACCCCAGGGGACCTCAGTCTGTCCATGCCCGGAAGTTCAAGAATAAAAGGCCACGGAG
TAATAGCGATTCTTTTCAGGAAGAGCATCTGAGGCAGAGTTTTCAGTGGACGAAGAGCCT
TCCCTTTGGGGCAGCCTCATCTTACCTGAACTTGGAGAAGCTGGGTGAAGGCTCTTATGC
TACAGTTTACAAGGGGATCAGCAGGATAAATGGACAACTAGTGGCTTTGAACTCCCATTA
CATGAATGCAGAGGAAGGAGTCCCATTTACAGCCATCCGGGAAGCTTCTCTCCTGAAGGG
TTTGAAACATGCCAATATTGTGCTCTTGCATGACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGGGTGGGGTTAGATGGCAACGGCGTCTTGTAGGGATCAAATTACTCAAGAGCGTTAG
GCACTGTGGGCAACGTTCCCAGGATGCTGCCTTTTCTTTAGGACCAGGCAGAGTATATAT
GCCTGGGATGCACTTGAGCAATGACGTAACATGGCGTCGCCGGGACCTAATTATCCGATC
GCTTCCATGGTAACAGATGGTGAGGAGAGAGGTTGGGAGCTGCAGATATTTTGCTGCCAC
CTCAAACTGCAGGAGTCCGAACGCAGACCTAAAAGAAGCATCATGTTCCATGACTTCATT
TCACCCCAGGGGACCTCAGTCTGTCCATGCCCGGAAGTTCAAGAATAAAAGGCCACGGAG
TAATAGCGATTCTTTTCAGGAAGAGCATCTGAGGCAGAGTTTTCAGTGGACGAAGAGCCT
TCCCTTTGGGGCAGCCTCATCTTACCTGAACTTGGAGAAGCTGGGTGAAGGCTCTTATGC
TACAGTTTACAAGGGGATCAGCAGGATAAATGGACAACTAGTGGCTTTGAACTCCCATTA
CATGAATGCAGAGGAAGGAGTCCCATTTACAGCCATCCGGGAAGCTTCTCTCCTGAAGGG
TTTGAAACATGCCAATATTGTGCTCTTGCATGACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61846408|ref|XP_603254.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61846408|ref|XP_603254.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               5-261, gnl|bosTau2|chr2 (52699569-52699310)
               

               
               5-261, gnl|canFam2|chr37 (13824879-13825126)
               

               
               5-261, gnl|echTel1|scaffold_323497 (81459-81193)
               

               
               5-261, gnl|hg17|chr2 (202471211-202471486)
               

               
               5-261, gnl|Hg17|chr2 (202471281-202471543)
               

               
               5-261, gnl|loxAfr1|scaffold_4641 (104745-105002)
               

               
               5-261, gnl|mm7|chr1 (59488415-59488649)
               

               
               5-261, gnl|Mm7|chr1 (59488459-59488697)
               

               
               5-261, gnl|oryCun1|scaffold_214669 (102350-102631)
               

               
               5-261, gnl|panTro1|chr13 (92459451-92459726)
               

               
               5-261, gnl|rheMac2|chr12 (65583188-65583464)
               

               
               5-261, gnl|rn3|chr9 (57959683-57959912)
               


               
               264-409, gnl|bosTau2|chr2 (52850245-52850100)
               

               
               264-409, gnl|Hg17|chr2 (202497727-202497872)
               

               
               264-409, gnl|Mm7|chr1 (59508978-59509114)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-261, gnl|bosTau2|chr2 (52699569-52699310)
               

               
               5-261, gnl|canFam2|chr37 (13824879-13825126)
               

               
               5-261, gnl|echTel1|scaffold_323497 (81459-81193)
               

               
               5-261, gnl|hg17|chr2 (202471211-202471486)
               

               
               5-261, gnl|Hg17|chr2 (202471281-202471543)
               

               
               5-261, gnl|loxAfr1|scaffold_4641 (104745-105002)
               

               
               5-261, gnl|mm7|chr1 (59488415-59488649)
               

               
               5-261, gnl|Mm7|chr1 (59488459-59488697)
               

               
               5-261, gnl|oryCun1|scaffold_214669 (102350-102631)
               

               
               5-261, gnl|panTro1|chr13 (92459451-92459726)
               

               
               5-261, gnl|rheMac2|chr12 (65583188-65583464)
               

               
               5-261, gnl|rn3|chr9 (57959683-57959912)
               


               
               264-409, gnl|bosTau2|chr2 (52850245-52850100)
               

               
               264-409, gnl|Hg17|chr2 (202497727-202497872)
               

               
               264-409, gnl|Mm7|chr1 (59508978-59509114)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	5-261, gnl\|bosTau2\|chr2 (52699569-52699310)
	5-261, gnl\|canFam2\|chr37 (13824879-13825126)
	5-261, gnl\|echTel1\|scaffold_323497 (81459-81193)
	5-261, gnl\|hg17\|chr2 (202471211-202471486)
	5-261, gnl\|Hg17\|chr2 (202471281-202471543)
	5-261, gnl\|loxAfr1\|scaffold_4641 (104745-105002)
	5-261, gnl\|mm7\|chr1 (59488415-59488649)
	5-261, gnl\|Mm7\|chr1 (59488459-59488697)
	5-261, gnl\|oryCun1\|scaffold_214669 (102350-102631)
	5-261, gnl\|panTro1\|chr13 (92459451-92459726)
	5-261, gnl\|rheMac2\|chr12 (65583188-65583464)
	5-261, gnl\|rn3\|chr9 (57959683-57959912)

	264-409, gnl\|bosTau2\|chr2 (52850245-52850100)
	264-409, gnl\|Hg17\|chr2 (202497727-202497872)
	264-409, gnl\|Mm7\|chr1 (59508978-59509114)