Ss1.1-rfce15c_d7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCCACCTGCTGCCAGGCCCCACCAAAGCCAACGGCCAGGAGCCATCTGGGCCATTCAG AGACTGAGGGAGATTTGGGCGGAGGGTGGGGGCCGAGGTGGAGGAGCACCCCACCCCAGG ACTGTTTTTGAAAGCAACGGATTGAGAGGGGAGTAGAGGCTGCAGGGCCAGAAGTCTTGG CCCACTTCTCTCTCCTGTCCCAGTCTCTCCAGTACTTTCCGGGGAAATAGGCCCCTTCGA GGTTCCAGAGTGGCCTCAGATGGCCACAACCCAGTTTCATCTCTGAGAGCCCAGCCTGGG CGGCATCAGAGGCCAGCACCCGGATCATTCACTGTGATGTGCCAGCCCTCCAGAGCGTCC CCCTCAGACCACATGCAGGTGTGCTCCTTCCCCCCACTGGGGAGAAAGTGTGTGACTTCT CTCCCACCTTCTCCCCTCCATTGGACCTTTGCCCAGGTCTGAAGGTCGTGGCCATGGGAG ACCCATCAGCCAAGGAGGTCTGGCCACAGACTCTCTCCTGAGAGCAAACACGGGCACCTG ATCGGAACAATCGGTTAGTGAACTGAATGGAAATAAATGCTTTAGTTAGAAAATGAAAAA AAAAAAAAAAAAAAACCTGGATGCCTTCCCTCTGCTCTCGGCCTACGTGGCCCGCCTCAG CGCCCGGCCCAAGATCAAGGCCTTCCTGGCCTCCCCCGAGCATGTGAACCGCCCCATCAA CGGCAACGGGAAACAGTAGGGGCTTTGTGGCTGGAGGCGGGAGCCGCCTGCTTCCCTTTC TCCAGGACCAATAAAATTTCCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCCACCTGCTGCCAGGCCCCACCAAAGCCAACGGCCAGGAGCCATCTGGGCCATTCAG AGACTGAGGGAGATTTGGGCGGAGGGTGGGGGCCGAGGTGGAGGAGCACCCCACCCCAGG ACTGTTTTTGAAAGCAACGGATTGAGAGGGGAGTAGAGGCTGCAGGGCCAGAAGTCTTGG CCCACTTCTCTCTCCTGTCCCAGTCTCTCCAGTACTTTCCGGGGAAATAGGCCCCTTCGA GGTTCCAGAGTGGCCTCAGATGGCCACAACCCAGTTTCATCTCTGAGAGCCCAGCCTGGG CGGCATCAGAGGCCAGCACCCGGATCATTCACTGTGATGTGCCAGCCCTCCAGAGCGTCC CCCTCAGACCACATGCAGGTGTGCTCCTTCCCCCCACTGGGGAGAAAGTGTGTGACTTCT CTCCCACCTTCTCCCCTCCATTGGACCTTTGCCCAGGTCTGAAGGTCGTGGCCATGGGAG ACCCATCAGCCAAGGAGGTCTGGCCACAGACTCTCTCCTGAGAGCAAACACGGGCACCTG ATCGGAACAATCGGTTAGTGAACTGAATGGAAATAAATGCTTTAGTTAGAAAATGAAAAA AAAAAAAAAAAAAAACCTGGATGCCTTCCCTCTGCTCTCGGCCTACGTGGCCCGCCTCAG CGCCCGGCCCAAGATCAAGGCCTTCCTGGCCTCCCCCGAGCATGTGAACCGCCCCATCAA CGGCAACGGGAAACAGTAGGGGCTTTGTGGCTGGAGGCGGGAGCCGCCTGCTTCCCTTTC TCCAGGACCAATAAAATTTCCCAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 401-533, - strand, RNAz p=0.987388 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 401-533, - strand, RNAz p=0.987388 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-596, gnl|bosTau2|chr2 (83263535-83262943) | |
| 1-596, gnl|Hg17|chr1 (22986525-22987129) | |
| 1-596, gnl|Mm7|chr4 (136032673-136032042) | |
| 617-804, gnl|bosTau2|chr29 (39618955-39618757) | |
| 617-804, gnl|canFam2|chr18 (52931486-52931255) | |
| 617-804, gnl|canFam2|chrX (10574346-10574542) | |
| 617-804, gnl|danRer3|chr1 (5936203-5936015) | |
| 617-804, gnl|danRer3|chr1 (5925900-5925686) | |
| 617-804, gnl|dasNov1|scaffold_172797 (1062-874) | |
| 617-804, gnl|dasNov1|scaffold_172797 (1105-873) | |
| 617-804, gnl|echTel1|scaffold_104485 (1941-1746) | |
| 617-804, gnl|echTel1|scaffold_319577 (37767-37534) | |
| 617-804, gnl|hg17|chr11 (67110401-67110626) | |
| 617-804, gnl|Hg17|chr11 (67110502-67110693) | |
| 617-804, gnl|hg17|chr12 (54580491-54580684) | |
| 617-804, gnl|loxAfr1|scaffold_152343 (4331-4502) | |
| 617-804, gnl|loxAfr1|scaffold_152343 (4294-4502) | |
| 617-804, gnl|mm7|chr1 (191626925-191626729) | |
| 617-804, gnl|mm7|chr19 (3930504-3930279) | |
| 617-804, gnl|Mm7|chr19 (3930401-3930219) | |
| 617-804, gnl|monDom2|scaffold_226 (652857-652656) | |
| 617-804, gnl|monDom2|scaffold_226 (652889-652663) | |
| 617-804, gnl|oryCun1|scaffold_79330 (616-420) | |
| 617-804, gnl|oryCun1|scaffold_79330 (651-427) | |
| 617-804, gnl|panTro1|chr10 (55808871-55809064) | |
| 617-804, gnl|panTro1|chr9_random (30701006-30700781) | |
| 617-804, gnl|rheMac2|chr11 (52951879-52952071) | |
| 617-804, gnl|rheMac2|chr14 (6863976-6863751) | |
| 617-804, gnl|rn3|chr1 (206781142-206780917) | |
| 617-804, gnl|rn3|chr16 (40846166-40846361) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-596, gnl|bosTau2|chr2 (83263535-83262943) | |
| 1-596, gnl|Hg17|chr1 (22986525-22987129) | |
| 1-596, gnl|Mm7|chr4 (136032673-136032042) | |
| 617-804, gnl|bosTau2|chr29 (39618955-39618757) | |
| 617-804, gnl|canFam2|chr18 (52931486-52931255) | |
| 617-804, gnl|canFam2|chrX (10574346-10574542) | |
| 617-804, gnl|danRer3|chr1 (5936203-5936015) | |
| 617-804, gnl|danRer3|chr1 (5925900-5925686) | |
| 617-804, gnl|dasNov1|scaffold_172797 (1062-874) | |
| 617-804, gnl|dasNov1|scaffold_172797 (1105-873) | |
| 617-804, gnl|echTel1|scaffold_104485 (1941-1746) | |
| 617-804, gnl|echTel1|scaffold_319577 (37767-37534) | |
| 617-804, gnl|hg17|chr11 (67110401-67110626) | |
| 617-804, gnl|Hg17|chr11 (67110502-67110693) | |
| 617-804, gnl|hg17|chr12 (54580491-54580684) | |
| 617-804, gnl|loxAfr1|scaffold_152343 (4331-4502) | |
| 617-804, gnl|loxAfr1|scaffold_152343 (4294-4502) | |
| 617-804, gnl|mm7|chr1 (191626925-191626729) | |
| 617-804, gnl|mm7|chr19 (3930504-3930279) | |
| 617-804, gnl|Mm7|chr19 (3930401-3930219) | |
| 617-804, gnl|monDom2|scaffold_226 (652857-652656) | |
| 617-804, gnl|monDom2|scaffold_226 (652889-652663) | |
| 617-804, gnl|oryCun1|scaffold_79330 (616-420) | |
| 617-804, gnl|oryCun1|scaffold_79330 (651-427) | |
| 617-804, gnl|panTro1|chr10 (55808871-55809064) | |
| 617-804, gnl|panTro1|chr9_random (30701006-30700781) | |
| 617-804, gnl|rheMac2|chr11 (52951879-52952071) | |
| 617-804, gnl|rheMac2|chr14 (6863976-6863751) | |
| 617-804, gnl|rn3|chr1 (206781142-206780917) | |
| 617-804, gnl|rn3|chr16 (40846166-40846361) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| ese (0.126502) | |
| jej (0.0989218) |