Ss1.1-rfce18c_j9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGGCACGGAGTGGGAACGGGTGGCCCGGCTGTGTGACTTTAACCCCAAGTCCAGCAA GCAGGCCAAAGATGTCTCCCGCATGCGTTCTGTCCTCATCTCCCTCAAGCAGGCCCCCCT GGTGCACTGAAGAGCCACCATGTGGAAACACTACATCTGCAATATCTTAATCCTACTCAG TGAAGCTCTTCACAGTAATGGGATTAATTATGTTGAGTTCTTTGGGACCAAACCTTTTGG TCTTTAGAGTTGATCATTGTTTGTGATTGCATGTTTCCTTCAACTGTGTTCTCCCTGGCA TTCAGAGAGGAGCGGAGGCGCCCAGGGAAGGGAGGGAGGCCTCCCAAGGGCAGCCTCAAC AAAGTTATGCTCTAACATGGAAAGCAGATATTTTTGTATGTAATATAGGCAATCTCCTGA AACACTGAAAGGTGTATTGGAATAAATACATTTTAAAATAAAAGCATGCAAAGCTGTAGC TTTTAAATGTACAGACATCCCACTCGGAAAGATCTAACCTGATGGTGGAAAAACATTGGC ATCTGATGTCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGGCACGGAGTGGGAACGGGTGGCCCGGCTGTGTGACTTTAACCCCAAGTCCAGCAA GCAGGCCAAAGATGTCTCCCGCATGCGTTCTGTCCTCATCTCCCTCAAGCAGGCCCCCCT GGTGCACTGAAGAGCCACCATGTGGAAACACTACATCTGCAATATCTTAATCCTACTCAG TGAAGCTCTTCACAGTAATGGGATTAATTATGTTGAGTTCTTTGGGACCAAACCTTTTGG TCTTTAGAGTTGATCATTGTTTGTGATTGCATGTTTCCTTCAACTGTGTTCTCCCTGGCA TTCAGAGAGGAGCGGAGGCGCCCAGGGAAGGGAGGGAGGCCTCCCAAGGGCAGCCTCAAC AAAGTTATGCTCTAACATGGAAAGCAGATATTTTTGTATGTAATATAGGCAATCTCCTGA AACACTGAAAGGTGTATTGGAATAAATACATTTTAAAATAAAAGCATGCAAAGCTGTAGC TTTTAAATGTACAGACATCCCACTCGGAAAGATCTAACCTGATGGTGGAAAAACATTGGC ATCTGATGTCGT |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 122-233, + strand, RNAz p=0.867104 | |
| 361-477, + strand, RNAz p=0.658894 | |
| 423-534, - strand, RNAz p=0.783304 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 122-233, + strand, RNAz p=0.867104 | |
| 361-477, + strand, RNAz p=0.658894 | |
| 423-534, - strand, RNAz p=0.783304 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 3-360, gnl|bosTau2|chr10 (879404-879066) | |
| 3-360, gnl|Hg17|chr12 (7651072-7651438) | |
| 3-360, gnl|Mm7|chr4 (44046259-44046609) | |
| 361-552, gnl|bosTau2|chr17 (25674522-25674712) | |
| 361-552, gnl|canFam2|chr26 (7461027-7460880) | |
| 361-552, gnl|canFam2|chr26 (7461129-7460639) | |
| 361-552, gnl|canFam2|chr26 (7460598-7461069) | |
| 361-552, gnl|dasNov1|scaffold_0 (658025-658527) | |
| 361-552, gnl|dasNov1|scaffold_0 (658567-658085) | |
| 361-552, gnl|dasNov1|scaffold_962 (44683-44545) | |
| 361-552, gnl|echTel1|scaffold_197667 (9287-9429) | |
| 361-552, gnl|echTel1|scaffold_197667 (9186-9713) | |
| 361-552, gnl|echTel1|scaffold_197667 (9737-9245) | |
| 361-552, gnl|hg17|chr12 (126640329-126640475) | |
| 361-552, gnl|hg17|chr12 (124667986-124668497) | |
| 361-552, gnl|hg17|chr12 (126322561-126323111) | |
| 361-552, gnl|Hg17|chr12 (126323095-126322840) | |
| 361-552, gnl|loxAfr1|scaffold_1494 (64338-64482) | |
| 361-552, gnl|loxAfr1|scaffold_1494 (64236-64756) | |
| 361-552, gnl|loxAfr1|scaffold_1494 (64781-64296) | |
| 361-552, gnl|mm7|chr5 (126126637-126126776) | |
| 361-552, gnl|mm7|chr5 (125031565-125032101) | |
| 361-552, gnl|mm7|chr5 (125032123-125031620) | |
| 361-552, gnl|Mm7|chr5 (125031632-125031825) | |
| 361-552, gnl|monDom2|scaffold_54 (11681092-11680954) | |
| 361-552, gnl|monDom2|scaffold_54 (11681202-11680665) | |
| 361-552, gnl|monDom2|scaffold_54 (11680636-11681176) | |
| 361-552, gnl|oryCun1|scaffold_82247 (6207-6063) | |
| 361-552, gnl|oryCun1|scaffold_82247 (6308-5789) | |
| 361-552, gnl|oryCun1|scaffold_82247 (5764-6249) | |
| 361-552, gnl|panTro1|chr10 (129766682-129766828) | |
| 361-552, gnl|panTro1|chr10 (127757210-127757721) | |
| 361-552, gnl|panTro1|chr10 (129442527-129443077) | |
| 361-552, gnl|rheMac2|chr11 (128912589-128912735) | |
| 361-552, gnl|rheMac2|chr11 (126970718-126971230) | |
| 361-552, gnl|rheMac2|chr11 (128628754-128629258) | |
| 361-552, gnl|rn3|chr12 (30681431-30681300) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-360, gnl|bosTau2|chr10 (879404-879066) | |
| 3-360, gnl|Hg17|chr12 (7651072-7651438) | |
| 3-360, gnl|Mm7|chr4 (44046259-44046609) | |
| 361-552, gnl|bosTau2|chr17 (25674522-25674712) | |
| 361-552, gnl|canFam2|chr26 (7461027-7460880) | |
| 361-552, gnl|canFam2|chr26 (7461129-7460639) | |
| 361-552, gnl|canFam2|chr26 (7460598-7461069) | |
| 361-552, gnl|dasNov1|scaffold_0 (658025-658527) | |
| 361-552, gnl|dasNov1|scaffold_0 (658567-658085) | |
| 361-552, gnl|dasNov1|scaffold_962 (44683-44545) | |
| 361-552, gnl|echTel1|scaffold_197667 (9287-9429) | |
| 361-552, gnl|echTel1|scaffold_197667 (9186-9713) | |
| 361-552, gnl|echTel1|scaffold_197667 (9737-9245) | |
| 361-552, gnl|hg17|chr12 (126640329-126640475) | |
| 361-552, gnl|hg17|chr12 (124667986-124668497) | |
| 361-552, gnl|hg17|chr12 (126322561-126323111) | |
| 361-552, gnl|Hg17|chr12 (126323095-126322840) | |
| 361-552, gnl|loxAfr1|scaffold_1494 (64338-64482) | |
| 361-552, gnl|loxAfr1|scaffold_1494 (64236-64756) | |
| 361-552, gnl|loxAfr1|scaffold_1494 (64781-64296) | |
| 361-552, gnl|mm7|chr5 (126126637-126126776) | |
| 361-552, gnl|mm7|chr5 (125031565-125032101) | |
| 361-552, gnl|mm7|chr5 (125032123-125031620) | |
| 361-552, gnl|Mm7|chr5 (125031632-125031825) | |
| 361-552, gnl|monDom2|scaffold_54 (11681092-11680954) | |
| 361-552, gnl|monDom2|scaffold_54 (11681202-11680665) | |
| 361-552, gnl|monDom2|scaffold_54 (11680636-11681176) | |
| 361-552, gnl|oryCun1|scaffold_82247 (6207-6063) | |
| 361-552, gnl|oryCun1|scaffold_82247 (6308-5789) | |
| 361-552, gnl|oryCun1|scaffold_82247 (5764-6249) | |
| 361-552, gnl|panTro1|chr10 (129766682-129766828) | |
| 361-552, gnl|panTro1|chr10 (127757210-127757721) | |
| 361-552, gnl|panTro1|chr10 (129442527-129443077) | |
| 361-552, gnl|rheMac2|chr11 (128912589-128912735) | |
| 361-552, gnl|rheMac2|chr11 (126970718-126971230) | |
| 361-552, gnl|rheMac2|chr11 (128628754-128629258) | |
| 361-552, gnl|rn3|chr12 (30681431-30681300) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| ret (0.128733) |