Ss1.1-rfce19c_i21.5
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TTCCCATCATGTGGTGCACGTGGTTACTGCGTAATGTGCATAAGCCTTACCAGTGACACT
CAGCCACTCCGTTCCTCCACCAGATCCCCAACTTTCTCGGCTATAAACATACTGGCCAGA
TATCTTGCAGAATTAACCCTCCCCAGTCATCATACTCTCTTCTCCTTCCTGGAATCTGGG
GCAGACTATTCGTTTCCCTAGAAAAGCTAGATATTTCTCTTCCTGTTCCCATCTGAAACC
TCTCCCATTGTGCTTCACCACGCGGGACACACTGATGCTCGGGGGAATCTCTGACAGCTA
AGCTTCTCAGTCCTCTTGGGCTGCACCCCAGCTTCTGTGCAGACCACCTCTCATTTCCCA
GGGCTGCTCCTTTCTCCCTGATGGCTACACCCCATCTCTCATCTCGACATCCAGCACGCG
CTTTCCCCATGCCCCCGCCCCCATCCCATGTTGTCGTGCTGGGCCAAGAAGCATCCCTTG
ATGTGTGCTCTGCTCTGCCCTTCAGAAGCCGAACTTCAGTCTTAGTGTCCCTTCCCACCC
GCCACGGCTGGTTATAGCACTTCCACTGCTTGTATCAGGTAGGAAGTGATTGAAGCAGGG
GGTAAAGAGAGCTCGTCGTCTTTCTAAGCAGAAAAGCAGAAAAAGACAAGACATACCCTG
TTGACCTGAGAGAAGTAAACTCCAGAAGGGAACCAAGAACTCCTCTCTTCCCTGGTGAGT
ATTTCCATTATTCCGTTAAGGTTTAATATGCATTCAGATTACTTTTACTAAATAGTACAC
CATAAAGCTTTTGTTATATATTAAATGTAAACTGAGAGGAATGTAAACTTATGTATTGTT
AATTATAAATATAGATAAGTAATGACATAATAGATGAAAAAGTCTTATTCAGATGTATCG
CATTCATTTTACATTACCCACCCCTTGTCGCATGGTAGAATAGTTTTTTTTGTCTCTGAA
TATGTGAATAACTTGACTTGCGTTTATCTTTTTACATATTTAATAAAAAAAGTATATGTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
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TTCCCATCATGTGGTGCACGTGGTTACTGCGTAATGTGCATAAGCCTTACCAGTGACACT
CAGCCACTCCGTTCCTCCACCAGATCCCCAACTTTCTCGGCTATAAACATACTGGCCAGA
TATCTTGCAGAATTAACCCTCCCCAGTCATCATACTCTCTTCTCCTTCCTGGAATCTGGG
GCAGACTATTCGTTTCCCTAGAAAAGCTAGATATTTCTCTTCCTGTTCCCATCTGAAACC
TCTCCCATTGTGCTTCACCACGCGGGACACACTGATGCTCGGGGGAATCTCTGACAGCTA
AGCTTCTCAGTCCTCTTGGGCTGCACCCCAGCTTCTGTGCAGACCACCTCTCATTTCCCA
GGGCTGCTCCTTTCTCCCTGATGGCTACACCCCATCTCTCATCTCGACATCCAGCACGCG
CTTTCCCCATGCCCCCGCCCCCATCCCATGTTGTCGTGCTGGGCCAAGAAGCATCCCTTG
ATGTGTGCTCTGCTCTGCCCTTCAGAAGCCGAACTTCAGTCTTAGTGTCCCTTCCCACCC
GCCACGGCTGGTTATAGCACTTCCACTGCTTGTATCAGGTAGGAAGTGATTGAAGCAGGG
GGTAAAGAGAGCTCGTCGTCTTTCTAAGCAGAAAAGCAGAAAAAGACAAGACATACCCTG
TTGACCTGAGAGAAGTAAACTCCAGAAGGGAACCAAGAACTCCTCTCTTCCCTGGTGAGT
ATTTCCATTATTCCGTTAAGGTTTAATATGCATTCAGATTACTTTTACTAAATAGTACAC
CATAAAGCTTTTGTTATATATTAAATGTAAACTGAGAGGAATGTAAACTTATGTATTGTT
AATTATAAATATAGATAAGTAATGACATAATAGATGAAAAAGTCTTATTCAGATGTATCG
CATTCATTTTACATTACCCACCCCTTGTCGCATGGTAGAATAGTTTTTTTTGTCTCTGAA
TATGTGAATAACTTGACTTGCGTTTATCTTTTTACATATTTAATAAAAAAAGTATATGTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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20-475, gnl|bosTau2|chr24 (17871092-17870641) |
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20-475, gnl|canFam2|chr7 (57827365-57826933) |
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20-475, gnl|dasNov1|scaffold_6605 (10774-10266) |
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20-475, gnl|echTel1|scaffold_183833 (2781-2383) |
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20-475, gnl|hg17|chr18 (30976273-30976769) |
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20-475, gnl|Hg17|chr18 (30976357-30976861) |
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20-475, gnl|loxAfr1|scaffold_196738 (1373-878) |
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20-475, gnl|mm7|chr18 (24277477-24277867) |
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20-475, gnl|Mm7|chr18 (24277545-24277961) |
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20-475, gnl|monDom2|scaffold_4 (119813800-119813245) |
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20-475, gnl|oryCun1|scaffold_205762 (348234-348664) |
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20-475, gnl|panTro1|chr17 (26931832-26932328) |
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20-475, gnl|rheMac2|chr18 (28121566-28122063) |
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20-475, gnl|rn3|chr1 (110148551-110148163) |
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508-1020, gnl|bosTau2|chr24 (17870639-17870144) |
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508-1020, gnl|Hg17|chr18 (30976873-30977428) |
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508-1020, gnl|Mm7|chr18 (24277963-24278510) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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20-475, gnl|bosTau2|chr24 (17871092-17870641) |
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20-475, gnl|canFam2|chr7 (57827365-57826933) |
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20-475, gnl|dasNov1|scaffold_6605 (10774-10266) |
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20-475, gnl|echTel1|scaffold_183833 (2781-2383) |
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20-475, gnl|hg17|chr18 (30976273-30976769) |
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20-475, gnl|Hg17|chr18 (30976357-30976861) |
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20-475, gnl|loxAfr1|scaffold_196738 (1373-878) |
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20-475, gnl|mm7|chr18 (24277477-24277867) |
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20-475, gnl|Mm7|chr18 (24277545-24277961) |
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20-475, gnl|monDom2|scaffold_4 (119813800-119813245) |
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20-475, gnl|oryCun1|scaffold_205762 (348234-348664) |
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20-475, gnl|panTro1|chr17 (26931832-26932328) |
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20-475, gnl|rheMac2|chr18 (28121566-28122063) |
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20-475, gnl|rn3|chr1 (110148551-110148163) |
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508-1020, gnl|bosTau2|chr24 (17870639-17870144) |
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508-1020, gnl|Hg17|chr18 (30976873-30977428) |
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508-1020, gnl|Mm7|chr18 (24277963-24278510) |
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fco (1.25766) |
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fcc (0.791139) |
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fce (0.543183) |
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ebs (0.354904) |
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spc (0.340097) |
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ecc (0.23007) |
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sto (0.179824) |
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fbs (0.175346) |
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fhi (0.169578) |
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csk (0.140746) |
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ste (0.135208) |
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lyg (0.133103) |
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ova (0.129132) |
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jca (0.11396) |
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fco (1.25766) |
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fcc (0.791139) |
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fce (0.543183) |
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ebs (0.354904) |
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spc (0.340097) |
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ecc (0.23007) |
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sto (0.179824) |
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fbs (0.175346) |
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fhi (0.169578) |
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csk (0.140746) |
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ste (0.135208) |
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lyg (0.133103) |
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ova (0.129132) |
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jca (0.11396) |