Non-Coding RNA Search

Ss1.1-rfce22c_e2.5

Sequence:


               
               TTTTGTTTCTTTGGGGTTTTATTGAAGGGGCTAGGGGCGGGAAGGGATTCTTTTCAGTTT
TGTATAAAAACAAAGTTTACTCATGCTTTATATTATATTGTGATTGCAAGCATTCTAAGC
ATTGTGTCGCTGGACTCCTTGTTGATGCTCTAGGTAATGGAGGCCCGTGGCGAGTTTTAT
GGTGACTTGGGCATGTCTTATTCAAAAACAACCACACAGACACAGAAACCTTTCTTCCAC
AGGCCAAGGCAAGCAGCCGTTTCATGACTCACTTAACACATTGCTGTGTACCAGTTTACA
GATGATTTTTCCCTTTTTGCGTGACATGGCAGTTCCAACCCACAGAGAATCCCTTATTTG
TAAATTGGAGGTTTGTACTATGCCTTACAGAGCTTAAATTCAGGAGTTTGTGCCTCATAT
CTGAAACAAAGGGAAATGACACACCCGTTCAAAAAATAAACATTTCCCCTCCAAGTGTTT
GTTTGTTTTTAAATACATTTTCATATAAAGAGCTCTGTTGAATGTCATGAGTAGACTGGG
GGAAAAAATCTTCTAGAAACCTGCATATGTTGTTTACTAGCAGATGACATCTACAAAAGG
TATTTGAAGAACATCTGAAACTTGTATTTTTTGTAGATTAACTAGCAGGTCTAATATTTA
AAAAAAGGTAATTCAGTTAAAGGACAATTTTTGTACTTCAGACTCTCTTGATTGTCAAGG
TGTATGAACTGTAATTTTAAAATTTATACTGCCACATGATTGTAAATTTTAGTTGTCTTA
AGTTAGGAATCAGTGAAAAGCTATTTATGCTGGATATGGGTCAAAAATGACTATTTGCAA
AAAATAATAATAATGGGAAGAAAGGGCTGCATAATAAGAGACTGCAAGACTCAGATACTG
GTTGGAAATAATCTTCACCCTCAATTTCCCTTTGTTTTCAGTTTCTCAAAAAGAATGAAT
GAAATGAAATATAGCAGAATGTTAACCCATATAAAAATAAAGTGTACCCAAATATTGTAA
CGTATAGTGCTGCTCTTCTTAAAATTAAATAAGGGTTTAAAACCACTTAATTGGTGATTG
ACAGCATCTCAGTTGACACAGATCAGGTGTGCTTGGTATACATATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTTTCTTTGGGGTTTTATTGAAGGGGCTAGGGGCGGGAAGGGATTCTTTTCAGTTT
TGTATAAAAACAAAGTTTACTCATGCTTTATATTATATTGTGATTGCAAGCATTCTAAGC
ATTGTGTCGCTGGACTCCTTGTTGATGCTCTAGGTAATGGAGGCCCGTGGCGAGTTTTAT
GGTGACTTGGGCATGTCTTATTCAAAAACAACCACACAGACACAGAAACCTTTCTTCCAC
AGGCCAAGGCAAGCAGCCGTTTCATGACTCACTTAACACATTGCTGTGTACCAGTTTACA
GATGATTTTTCCCTTTTTGCGTGACATGGCAGTTCCAACCCACAGAGAATCCCTTATTTG
TAAATTGGAGGTTTGTACTATGCCTTACAGAGCTTAAATTCAGGAGTTTGTGCCTCATAT
CTGAAACAAAGGGAAATGACACACCCGTTCAAAAAATAAACATTTCCCCTCCAAGTGTTT
GTTTGTTTTTAAATACATTTTCATATAAAGAGCTCTGTTGAATGTCATGAGTAGACTGGG
GGAAAAAATCTTCTAGAAACCTGCATATGTTGTTTACTAGCAGATGACATCTACAAAAGG
TATTTGAAGAACATCTGAAACTTGTATTTTTTGTAGATTAACTAGCAGGTCTAATATTTA
AAAAAAGGTAATTCAGTTAAAGGACAATTTTTGTACTTCAGACTCTCTTGATTGTCAAGG
TGTATGAACTGTAATTTTAAAATTTATACTGCCACATGATTGTAAATTTTAGTTGTCTTA
AGTTAGGAATCAGTGAAAAGCTATTTATGCTGGATATGGGTCAAAAATGACTATTTGCAA
AAAATAATAATAATGGGAAGAAAGGGCTGCATAATAAGAGACTGCAAGACTCAGATACTG
GTTGGAAATAATCTTCACCCTCAATTTCCCTTTGTTTTCAGTTTCTCAAAAAGAATGAAT
GAAATGAAATATAGCAGAATGTTAACCCATATAAAAATAAAGTGTACCCAAATATTGTAA
CGTATAGTGCTGCTCTTCTTAAAATTAAATAAGGGTTTAAAACCACTTAATTGGTGATTG
ACAGCATCTCAGTTGACACAGATCAGGTGTGCTTGGTATACATATTTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-328, gnl|bosTau2|chr16 (15110990-15111310)
               

               
               1-328, gnl|Hg17|chr9 (77562831-77562505)
               

               
               1-328, gnl|Mm7|chr19 (16087370-16087675)
               


               
               414-1128, gnl|bosTau2|chr16 (15111361-15112085)
               

               
               414-1128, gnl|Hg17|chr9 (77562417-77561691)
               

               
               414-1128, gnl|Mm7|chr19 (16087762-16088500)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-328, gnl|bosTau2|chr16 (15110990-15111310)
               

               
               1-328, gnl|Hg17|chr9 (77562831-77562505)
               

               
               1-328, gnl|Mm7|chr19 (16087370-16087675)
               


               
               414-1128, gnl|bosTau2|chr16 (15111361-15112085)
               

               
               414-1128, gnl|Hg17|chr9 (77562417-77561691)
               

               
               414-1128, gnl|Mm7|chr19 (16087762-16088500)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               lin (0.436808)
               

               
               gul (0.355177)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               gul (0.355177)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	1-328, gnl\|bosTau2\|chr16 (15110990-15111310)
	1-328, gnl\|Hg17\|chr9 (77562831-77562505)
	1-328, gnl\|Mm7\|chr19 (16087370-16087675)

	414-1128, gnl\|bosTau2\|chr16 (15111361-15112085)
	414-1128, gnl\|Hg17\|chr9 (77562417-77561691)
	414-1128, gnl\|Mm7\|chr19 (16087762-16088500)

	lin (0.436808)
	gul (0.355177)
	fce (0.271592)
	tra (0.246184)
	ebs (0.236602)
	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	col (0.195008)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	fco (0.157208)
	eli (0.151814)
	lun (0.150489)
	spl (0.143184)
	nca (0.136874)
	ova (0.129132)
	cbl (0.114797)
	eje (0.0988338)