Non-Coding RNA Search

Ss1.1-rfce22c_p21.5

Sequence:


               
               GGGCCCGGCCCAAGGCTCTTGGTTGTGTGTGGGGCAGGGCGGGGGGACGACCCGTGTGAC
CCCACCCCACCCCCCAGCCTGCTTTGCTGTAGGAACCACTAGAGCGTGATTTAAATAGCT
TTATTCATTTACAAGAGGAATATATTTGGCTTCTCTCTTAAAGACTCTGAGATTCACAAT
CAGCAGCTCTAAAAAATAAAGGAGCAGTTTGGCTTCCGGAAGGAAGAGGAAGCAACACTT
GGACCTGGTTCTTGTACAACAAGAAAACATTGCTGGGGCCCCCGTTGAGGCTGGGGTGGG
AGTGGAGGCCAGGCTGGTCTTTGGGGATCCCACCCCGCAGGGGGCCCCAGAGCTTGGTGG
GGAATGGGTTCCCCACCAACTTACCCACCATTGAAGCCATGGCAGCCAGGAACTAGGGAC
AGAGAATGCTAGGCTGGCTCTCGGGCTCCAGCTGGCCACGAGAGGCACCCAGACCAGAAC
CACCTTGATTCCAGCAATCGGGAAGGGTGCGTGGGGAGCAGAGGAGAGAGGAGACGCTCC
ACAAGAGGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCGGCCCAAGGCTCTTGGTTGTGTGTGGGGCAGGGCGGGGGGACGACCCGTGTGAC
CCCACCCCACCCCCCAGCCTGCTTTGCTGTAGGAACCACTAGAGCGTGATTTAAATAGCT
TTATTCATTTACAAGAGGAATATATTTGGCTTCTCTCTTAAAGACTCTGAGATTCACAAT
CAGCAGCTCTAAAAAATAAAGGAGCAGTTTGGCTTCCGGAAGGAAGAGGAAGCAACACTT
GGACCTGGTTCTTGTACAACAAGAAAACATTGCTGGGGCCCCCGTTGAGGCTGGGGTGGG
AGTGGAGGCCAGGCTGGTCTTTGGGGATCCCACCCCGCAGGGGGCCCCAGAGCTTGGTGG
GGAATGGGTTCCCCACCAACTTACCCACCATTGAAGCCATGGCAGCCAGGAACTAGGGAC
AGAGAATGCTAGGCTGGCTCTCGGGCTCCAGCTGGCCACGAGAGGCACCCAGACCAGAAC
CACCTTGATTCCAGCAATCGGGAAGGGTGCGTGGGGAGCAGAGGAGAGAGGAGACGCTCC
ACAAGAGGGCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               166-324, - strand, RNAz p=0.863699

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-324, - strand, RNAz p=0.863699

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-336, gnl|bosTau2|chr19 (19591279-19590933)
               

               
               1-336, gnl|Hg17|chr17 (4389215-4388841)
               

               
               1-336, gnl|Mm7|chr11 (72533152-72533441)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-336, gnl|bosTau2|chr19 (19591279-19590933)
               

               
               1-336, gnl|Hg17|chr17 (4389215-4388841)
               

               
               1-336, gnl|Mm7|chr11 (72533152-72533441)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               ton (0.351)
               

               
               fce (0.271592)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               nca (0.136874)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)
               

               
               fce (0.271592)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               nca (0.136874)

	1-336, gnl\|bosTau2\|chr19 (19591279-19590933)
	1-336, gnl\|Hg17\|chr17 (4389215-4388841)
	1-336, gnl\|Mm7\|chr11 (72533152-72533441)

	ton (0.351)
	fce (0.271592)
	nbm (0.198649)
	fcc (0.197785)
	ill (0.175593)
	fbs (0.175346)
	fhi (0.169578)
	cag (0.151194)
	nca (0.136874)