Non-Coding RNA Search

Ss1.1-rfce23c_h6.5

Sequence:


               
               GAGACAACCAGCTGGGCAAGGCGCTTCGGCAGATCAGGGAATGCAGAAGCCTGTGGCCCA
ACGACATCTTTGGGAGCAGTTCTGACGATGAGGTCCAGACGCTGCTGAACATTTACTTCC
GTCATCAAACGCTGGGACAGACGGGTACTTACGCGCTGGTGGGGTCCAACCAGAGCCTGA
CGGAGATCTGCACCAAGCTGATGGAGCTGAACCTGGAGATCCGGGACATGATCCGCAGGG
CCCAGAGCTACCGCGTCCTCACCGCCTTCCTTCCCGACTCCAGCGCTTCCGGCACGAGTC
TCTGACAGCAGCCGCCCGTCCCCCGAGGGGGCCAGGCTGGGGCTGCTGCCGTGCTGGGGC
GACGTCATTCAGCGTCTTCGCAGCCTTCCAAAGGCTGGGGCGGACTGTTCTCCCTCTTGT
TACCTGTAGGACTTTTTCTAGAGAGGATGGGGCAGAACCTCCCACGTGTAGCAATACTTA
AGAACCAAGGTCACACAGGACCTGCCGGGACAGACTCCATCGGTCACGCCCGTGTGGCAC
ACACGTGTCCTCGTTTTGCTAAACAGATGCAACTCACTACTGCAGACGTGACTCTCGTCG
CATACCAAAGCCGACTACTTCCAACAGTACCTTCCTTTCTAGAAACAATTTTAGATTGGC
AAAAGTGCAATGTTTTCTTCACTAAAAATATTTTATATTCTCAAACTTGTACATTCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACAACCAGCTGGGCAAGGCGCTTCGGCAGATCAGGGAATGCAGAAGCCTGTGGCCCA
ACGACATCTTTGGGAGCAGTTCTGACGATGAGGTCCAGACGCTGCTGAACATTTACTTCC
GTCATCAAACGCTGGGACAGACGGGTACTTACGCGCTGGTGGGGTCCAACCAGAGCCTGA
CGGAGATCTGCACCAAGCTGATGGAGCTGAACCTGGAGATCCGGGACATGATCCGCAGGG
CCCAGAGCTACCGCGTCCTCACCGCCTTCCTTCCCGACTCCAGCGCTTCCGGCACGAGTC
TCTGACAGCAGCCGCCCGTCCCCCGAGGGGGCCAGGCTGGGGCTGCTGCCGTGCTGGGGC
GACGTCATTCAGCGTCTTCGCAGCCTTCCAAAGGCTGGGGCGGACTGTTCTCCCTCTTGT
TACCTGTAGGACTTTTTCTAGAGAGGATGGGGCAGAACCTCCCACGTGTAGCAATACTTA
AGAACCAAGGTCACACAGGACCTGCCGGGACAGACTCCATCGGTCACGCCCGTGTGGCAC
ACACGTGTCCTCGTTTTGCTAAACAGATGCAACTCACTACTGCAGACGTGACTCTCGTCG
CATACCAAAGCCGACTACTTCCAACAGTACCTTCCTTTCTAGAAACAATTTTAGATTGGC
AAAAGTGCAATGTTTTCTTCACTAAAAATATTTTATATTCTCAAACTTGTACATTCTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55639691|ref|XP_509618.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55639691|ref|XP_509618.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               42-719, gnl|bosTau2|chr12 (15960560-15959883)
               

               
               42-719, gnl|Hg17|chr13 (31767334-31768018)
               

               
               42-719, gnl|Mm7|chr5 (149429246-149430040)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-719, gnl|bosTau2|chr12 (15960560-15959883)
               

               
               42-719, gnl|Hg17|chr13 (31767334-31768018)
               

               
               42-719, gnl|Mm7|chr5 (149429246-149430040)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hea (0.408998)
               

               
               fce (0.271592)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               fce (0.271592)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)

	42-719, gnl\|bosTau2\|chr12 (15960560-15959883)
	42-719, gnl\|Hg17\|chr13 (31767334-31768018)
	42-719, gnl\|Mm7\|chr5 (149429246-149430040)