Non-Coding RNA Search

Ss1.1-rfce23c_j20.5

Sequence:


               
               ATACTATTAGCAATAAAAGGGAAACAGTAATATTACTGTACACTACAGCTTAAGTGATTT
TTCTAAAAAGCACAACATCATTGAAAACGTTTATTTAGAAAGAATTCATAGTTCACATGG
AATTCGTGAAGGCCAAAGAAATGAAAAGAAATGGTTAAAAAAAAGATGACAAGTCTTTTT
CATCCGCATATTTGGTAGGTTTTGGTATACCAGAATACCAGATAGTGTTTTACCCATGAA
AATATATTTCAGATTACTTTATTTTTAGTGTTAGAACATCAAGTTTAGGAGTTTTAAAAA
TTAAATAAGTCCCCCCCCCCAATATTTAAAGATTGTTAATATATCAGTATTTCCCTAGCT
TGATGAATTTAACTATATCTTCAGATCTGTGACATGATAACCCATAGAACGGATAATATT
AACTTTGAACCAGTTGTATCCAGGGTTAAAATAAAAATCACAGGTAACTAGCGAGACTGT
GAAGTTATGCCATATTGAGTTGTGAGTCTGTAACAGCTTGATATCAAAGTTATGGAATAT
ACCATAAATACTGGCTAATGAGAACTTTAGGGAATTCTCAATTTTCTTACTAGTTTCTGG
AATGAATGTAGAAATGACCCTGTTAGCTTTTAAAAACTGTTCTATGGTTAAATTTTTATT
TTTTGACTTAAATAACACTTTTGGGATTTGTTTAAATTATGTTTCTTACGAGCTGGAAAT
TTTAGAATCATCCTGGTTTCATTTCAGTTTTCTGTTCTTTAAGATGAATGTTTAGTTTAC
TGAGCCAATTGGTCATTTCTTCTTCATGTCTTCTAAGTCCAGTGACTGTAATTCTGAACT
GTGAATAAGTTACCAAAAACTTACTGGGAATTGCATTTTGAAGCAGTTTGCCAATATTTG
AAGTATGTACATGTTTGTCATTGTGTTAAAGATTGTATTGTACTAAGCATGTAGCCAAGG
TTTACTTTAGTTGTTAGTAAATATTTCCAATGCTAAAAGTTTATTCATTACTGTTGCTTT
TAAAAAGAAGAAATGTTACATAAATATAATCAAAAGTCACATGTCTTCATTCCAACTTCC
TGATTATTTTAAAAAGGATTAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTATTAGCAATAAAAGGGAAACAGTAATATTACTGTACACTACAGCTTAAGTGATTT
TTCTAAAAAGCACAACATCATTGAAAACGTTTATTTAGAAAGAATTCATAGTTCACATGG
AATTCGTGAAGGCCAAAGAAATGAAAAGAAATGGTTAAAAAAAAGATGACAAGTCTTTTT
CATCCGCATATTTGGTAGGTTTTGGTATACCAGAATACCAGATAGTGTTTTACCCATGAA
AATATATTTCAGATTACTTTATTTTTAGTGTTAGAACATCAAGTTTAGGAGTTTTAAAAA
TTAAATAAGTCCCCCCCCCCAATATTTAAAGATTGTTAATATATCAGTATTTCCCTAGCT
TGATGAATTTAACTATATCTTCAGATCTGTGACATGATAACCCATAGAACGGATAATATT
AACTTTGAACCAGTTGTATCCAGGGTTAAAATAAAAATCACAGGTAACTAGCGAGACTGT
GAAGTTATGCCATATTGAGTTGTGAGTCTGTAACAGCTTGATATCAAAGTTATGGAATAT
ACCATAAATACTGGCTAATGAGAACTTTAGGGAATTCTCAATTTTCTTACTAGTTTCTGG
AATGAATGTAGAAATGACCCTGTTAGCTTTTAAAAACTGTTCTATGGTTAAATTTTTATT
TTTTGACTTAAATAACACTTTTGGGATTTGTTTAAATTATGTTTCTTACGAGCTGGAAAT
TTTAGAATCATCCTGGTTTCATTTCAGTTTTCTGTTCTTTAAGATGAATGTTTAGTTTAC
TGAGCCAATTGGTCATTTCTTCTTCATGTCTTCTAAGTCCAGTGACTGTAATTCTGAACT
GTGAATAAGTTACCAAAAACTTACTGGGAATTGCATTTTGAAGCAGTTTGCCAATATTTG
AAGTATGTACATGTTTGTCATTGTGTTAAAGATTGTATTGTACTAAGCATGTAGCCAAGG
TTTACTTTAGTTGTTAGTAAATATTTCCAATGCTAAAAGTTTATTCATTACTGTTGCTTT
TAAAAAGAAGAAATGTTACATAAATATAATCAAAAGTCACATGTCTTCATTCCAACTTCC
TGATTATTTTAAAAAGGATTAAGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1099, gnl|bosTau2|chr11 (48992470-48993560)
               

               
               1-1099, gnl|Hg17|chr2 (69461159-69460079)
               

               
               1-1099, gnl|Mm7|chr6 (87166448-87167566)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1099, gnl|bosTau2|chr11 (48992470-48993560)
               

               
               1-1099, gnl|Hg17|chr2 (69461159-69460079)
               

               
               1-1099, gnl|Mm7|chr6 (87166448-87167566)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

	1-1099, gnl\|bosTau2\|chr11 (48992470-48993560)
	1-1099, gnl\|Hg17\|chr2 (69461159-69460079)
	1-1099, gnl\|Mm7\|chr6 (87166448-87167566)

	fce (0.271592)
	tbr (0.154178)
	liv (0.146284)
	tra (0.123092)
	eru (0.120048)