Ss1.1-rfce24c_o8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGACTCTGGAGAGGAGCCGGAAACACCACCACAGGACAGCCCTCAGCCCAGGTCCCTA AGGCCTTCCTGGACCTGGAAAGAGCAGCTGCTGCCTTGGAGGCCCCCAGGCTTGGCTGCA GAGCGGTCCTCGGGAACCCCAGGTCCTCTCTCCCCCGAGATGACCTGGGAGGTGGCCCCA TCAAGGATGACCTTGCTAACACCGTGGGACCCCAACTATGAGGCTCAAGCAGAACCATGG CAGGTGTGGGGACCCAGCTGTGCATCTGGTGCCTCCTTCTCAGGCCGGACTTTGTGTCAT CCGTCATTCTGGCCCCTGTATGAGGCAGTCTCAGGCAGAGGCCTCAGGCCGGGTCTGACA GGACATTGGAGCCGAGAGCAGGTGCCGAGGGATGCAGGGCTCCCTGTGATGTCCTGTGAA GATGTCTTTCTTTCAGACCCTCTTCTGCCTTGTGGGCAGCGTGTTCCCCTATACCTGTCC GAGCCCCCTCAGCAGGTGATGGGCTCTCTGAAGCTGCTGCTCCCACCCCCGATCATGTCC CCCTGGGTGCTCCCCACTCCATCCTCTGGCTGTCCCACCGCCTGGCTCAGTGGGCCCGAG CTGATCGCCCTCACCGGTCTCCTGCAGATGAGCCAGGGGGAGCCGAGGCCCAGCTTCTCC GGGGCTCCCCCGCCCCCTCCCGGCCCCCCAGACCTCGTCTCTGACCACCCGGGTGCCAGT GGTGCCCAAAGCTGTTCTCACTGCACTGACCCATCTCTCCCACGAACCCCAGACACCCAT GGTCCATAGCCTCTCTGGGGGCAGAGTGGGCCCCCTACTTCCCCAGGCAGGTTCTGTTGA CAATAAAACAGTGTTGGTTTGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGACTCTGGAGAGGAGCCGGAAACACCACCACAGGACAGCCCTCAGCCCAGGTCCCTA AGGCCTTCCTGGACCTGGAAAGAGCAGCTGCTGCCTTGGAGGCCCCCAGGCTTGGCTGCA GAGCGGTCCTCGGGAACCCCAGGTCCTCTCTCCCCCGAGATGACCTGGGAGGTGGCCCCA TCAAGGATGACCTTGCTAACACCGTGGGACCCCAACTATGAGGCTCAAGCAGAACCATGG CAGGTGTGGGGACCCAGCTGTGCATCTGGTGCCTCCTTCTCAGGCCGGACTTTGTGTCAT CCGTCATTCTGGCCCCTGTATGAGGCAGTCTCAGGCAGAGGCCTCAGGCCGGGTCTGACA GGACATTGGAGCCGAGAGCAGGTGCCGAGGGATGCAGGGCTCCCTGTGATGTCCTGTGAA GATGTCTTTCTTTCAGACCCTCTTCTGCCTTGTGGGCAGCGTGTTCCCCTATACCTGTCC GAGCCCCCTCAGCAGGTGATGGGCTCTCTGAAGCTGCTGCTCCCACCCCCGATCATGTCC CCCTGGGTGCTCCCCACTCCATCCTCTGGCTGTCCCACCGCCTGGCTCAGTGGGCCCGAG CTGATCGCCCTCACCGGTCTCCTGCAGATGAGCCAGGGGGAGCCGAGGCCCAGCTTCTCC GGGGCTCCCCCGCCCCCTCCCGGCCCCCCAGACCTCGTCTCTGACCACCCGGGTGCCAGT GGTGCCCAAAGCTGTTCTCACTGCACTGACCCATCTCTCCCACGAACCCCAGACACCCAT GGTCCATAGCCTCTCTGGGGGCAGAGTGGGCCCCCTACTTCCCCAGGCAGGTTCTGTTGA CAATAAAACAGTGTTGGTTTGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 39-144, + strand, RNAz p=0.7479 | |
| 39-144, - strand, RNAz p=0.7479 | |
| 39-144, + strand, RNAz p=0.89372 | |
| 39-144, - strand, RNAz p=0.89372 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 39-144, + strand, RNAz p=0.7479 | |
| 39-144, - strand, RNAz p=0.7479 | |
| 39-144, + strand, RNAz p=0.89372 | |
| 39-144, - strand, RNAz p=0.89372 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002319, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 39-144, gnl|bosTau2|chr25 (32392104-32392209) | |
| 39-144, gnl|canFam2|chr6 (12121101-12121165) | |
| 39-144, gnl|dasNov1|scaffold_13425 (40162-40227) | |
| 39-144, gnl|echTel1|scaffold_229002 (6238-6177) | |
| 39-144, gnl|hg17|chr14 (69770839-69770907) | |
| 39-144, gnl|Hg17|chr7 (99815677-99815569) | |
| 39-144, gnl|Mm7|chr5 (136559722-136559820) | |
| 39-144, gnl|panTro1|chr15 (69456307-69456375) | |
| 249-398, gnl|bosTau2|chr25 (32392525-32392674) | |
| 249-398, gnl|canFam2|chr6 (12121268-12121623) | |
| 249-398, gnl|canFam2|chr6 (12121630-12121443) | |
| 249-398, gnl|dasNov1|scaffold_13425 (40349-40814) | |
| 249-398, gnl|dasNov1|scaffold_13425 (40700-40514) | |
| 249-398, gnl|echTel1|scaffold_162404 (3408-3604) | |
| 249-398, gnl|echTel1|scaffold_229002 (6165-5952) | |
| 249-398, gnl|hg17|chr14 (69770919-69771179) | |
| 249-398, gnl|hg17|chr7 (99815131-99815316) | |
| 249-398, gnl|Hg17|chr7 (99815288-99815133) | |
| 249-398, gnl|mm7|chr5 (136559910-136560340) | |
| 249-398, gnl|mm7|chr5 (136560241-136560076) | |
| 249-398, gnl|Mm7|chr5 (136560097-136560237) | |
| 249-398, gnl|monDom2|scaffold_66 (2428810-2429004) | |
| 249-398, gnl|oryCun1|scaffold_180913 (1216-791) | |
| 249-398, gnl|oryCun1|scaffold_180913 (877-1061) | |
| 249-398, gnl|panTro1|chr15 (69456387-69456646) | |
| 249-398, gnl|panTro1|chr6 (101590004-101590189) | |
| 249-398, gnl|rn3|chr12 (19695781-19696208) | |
| 249-398, gnl|rn3|chr12 (19696109-19695942) | |
| 475-863, gnl|bosTau2|chr25 (32392908-32393294) | |
| 475-863, gnl|Hg17|chr7 (99814866-99814504) | |
| 475-863, gnl|Mm7|chr5 (136560502-136560899) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-144, gnl|bosTau2|chr25 (32392104-32392209) | |
| 39-144, gnl|canFam2|chr6 (12121101-12121165) | |
| 39-144, gnl|dasNov1|scaffold_13425 (40162-40227) | |
| 39-144, gnl|echTel1|scaffold_229002 (6238-6177) | |
| 39-144, gnl|hg17|chr14 (69770839-69770907) | |
| 39-144, gnl|Hg17|chr7 (99815677-99815569) | |
| 39-144, gnl|Mm7|chr5 (136559722-136559820) | |
| 39-144, gnl|panTro1|chr15 (69456307-69456375) | |
| 249-398, gnl|bosTau2|chr25 (32392525-32392674) | |
| 249-398, gnl|canFam2|chr6 (12121268-12121623) | |
| 249-398, gnl|canFam2|chr6 (12121630-12121443) | |
| 249-398, gnl|dasNov1|scaffold_13425 (40349-40814) | |
| 249-398, gnl|dasNov1|scaffold_13425 (40700-40514) | |
| 249-398, gnl|echTel1|scaffold_162404 (3408-3604) | |
| 249-398, gnl|echTel1|scaffold_229002 (6165-5952) | |
| 249-398, gnl|hg17|chr14 (69770919-69771179) | |
| 249-398, gnl|hg17|chr7 (99815131-99815316) | |
| 249-398, gnl|Hg17|chr7 (99815288-99815133) | |
| 249-398, gnl|mm7|chr5 (136559910-136560340) | |
| 249-398, gnl|mm7|chr5 (136560241-136560076) | |
| 249-398, gnl|Mm7|chr5 (136560097-136560237) | |
| 249-398, gnl|monDom2|scaffold_66 (2428810-2429004) | |
| 249-398, gnl|oryCun1|scaffold_180913 (1216-791) | |
| 249-398, gnl|oryCun1|scaffold_180913 (877-1061) | |
| 249-398, gnl|panTro1|chr15 (69456387-69456646) | |
| 249-398, gnl|panTro1|chr6 (101590004-101590189) | |
| 249-398, gnl|rn3|chr12 (19695781-19696208) | |
| 249-398, gnl|rn3|chr12 (19696109-19695942) | |
| 475-863, gnl|bosTau2|chr25 (32392908-32393294) | |
| 475-863, gnl|Hg17|chr7 (99814866-99814504) | |
| 475-863, gnl|Mm7|chr5 (136560502-136560899) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cbr (0.511902) | |
| lnt (0.426925) | |
| csp (0.322373) | |
| fce (0.271592) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.511902) | |
| lnt (0.426925) | |
| csp (0.322373) | |
| fce (0.271592) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) |