Non-Coding RNA Search

Ss1.1-rfce25c_k23.5

Sequence:


               
               TTTGGTATTATCGGCAATCAGAAAGTCTTCAGTCTACCACATACCACCCTCCCTACTTTC
TTCTCATTGTTTGGCTGAAGTTTGCCTCTTGTGAGAGACAAATGCCACCCCCTTTTCACA
TAGCTTTTTTCCAGTCCAAAGTAAAAGGTATTCCCCTACACCCATCCCAACGATATGATC
TAATACTGTTTTTAGGAGGAACCACTTGTTTGTAATCCTATAATCTACTGGTTATGTTAT
GTCTTCTCAACTTCAGTTTACTAGAACTGGCCTCAGGGCATCATCAGTTCAGATTCCTAA
ATAACTCCTTTTCTCCACACCCCTCCACCCCTCCAGCTGGTGAGCCCTGGGCCAGATTGT
TCGATCTTCAGGTATTTTAAAATTTAGGTATAATATCAACTAATGTAAATTAATCCAGAT
GCTAATTTTTGTGGTGCAAGAAGTTTCTTTTGTAAATTCAGGGTATGGATAAGCTAATTA
AGATATCCTTTTTTGGTGGCTCTAAGTGTATTATTTGTTTTTAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGTATTATCGGCAATCAGAAAGTCTTCAGTCTACCACATACCACCCTCCCTACTTTC
TTCTCATTGTTTGGCTGAAGTTTGCCTCTTGTGAGAGACAAATGCCACCCCCTTTTCACA
TAGCTTTTTTCCAGTCCAAAGTAAAAGGTATTCCCCTACACCCATCCCAACGATATGATC
TAATACTGTTTTTAGGAGGAACCACTTGTTTGTAATCCTATAATCTACTGGTTATGTTAT
GTCTTCTCAACTTCAGTTTACTAGAACTGGCCTCAGGGCATCATCAGTTCAGATTCCTAA
ATAACTCCTTTTCTCCACACCCCTCCACCCCTCCAGCTGGTGAGCCCTGGGCCAGATTGT
TCGATCTTCAGGTATTTTAAAATTTAGGTATAATATCAACTAATGTAAATTAATCCAGAT
GCTAATTTTTGTGGTGCAAGAAGTTTCTTTTGTAAATTCAGGGTATGGATAAGCTAATTA
AGATATCCTTTTTTGGTGGCTCTAAGTGTATTATTTGTTTTTAAATAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               231-350, + strand, RNAz p=0.808898

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-350, + strand, RNAz p=0.808898

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-528, gnl|bosTau2|chr19 (36306754-36306226)
               

               
               1-528, gnl|Hg17|chr2 (36983130-36982609)
               

               
               1-528, gnl|Mm7|chr17 (76950988-76950481)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr19 (36306754-36306226)
               

               
               1-528, gnl|Hg17|chr2 (36983130-36982609)
               

               
               1-528, gnl|Mm7|chr17 (76950988-76950481)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               thg (0.126791)

	1-528, gnl\|bosTau2\|chr19 (36306754-36306226)
	1-528, gnl\|Hg17\|chr2 (36983130-36982609)
	1-528, gnl\|Mm7\|chr17 (76950988-76950481)