Non-Coding RNA Search

Ss1.1-rfce26c_c7.5

Sequence:


               
               TCTTAGCGAACTTATTCTTAAGAAATTGTACTTTTTATTGTAAGACGAGTAAAAGGACTA
CTTCAACACTTGTCATATTAAGAAACCAAGTTTAATCTAGCACTTGTGACATACCAATAC
TAGAGTTTATTGTACTTCTGTGGGAAACGTGTTTTAGGGACGCTGCGCAGAAGTCCAAGG
GCGCTGCCTGTCTCTCCCGGGTTGACTCGGAGGCGTTTGTTGGCTTTGGCTCCTCCCGCC
TCTCTTTGCTCGGGGCGAGCGCTGCCCTCACCAGCCCTGGTGGCCGTCGGGCCCGCTGGG
GACCCGGGAGGCCCCGGCGGCCCCTTCCGTACAGCAGTGCCGACTTTTCATTTCTTCTAG
GTGATGTATGGCTAAGATTTCCCTTTCGACTCGGTAGTCGTGGACTGTGCTGCACTGTGC
TTTCAGATTACACTTTGCATCGAAAGGAAACCGTTTCTTCCTTGCGATGGAGCCGAGCTG
GCCCAGCGCAGCTCCCTCTGTCTCTCTGACACGATTCAAAGTCTCCTGTCGAAGGACAAG
GAAAGCGGACAGTTTCTGTTTGTTGTTGCTGTTGGGTTTTTTTCCTTTGGTGTGTGTGCC
CCCAGGGAGGTCCTCTTTTCCAGTTTATGAGAATGACACCCATGTATAATATAGAGAGGC
GGGGGGTTGACCCTTTTCACCCAAGAGCTCCTGACGGGTCTGTCGTGGGAAGCGCGGCGA
CGGCGGTGTCACCTCCCGCGACGGCGGTTCGCCTCTGCTCGCGCAGAGACCTGCTCCGTC
TGTGACTGAGTCGGTTCCCTCTGATTGTCTGGACCTGCCGGTGGTCCTTTCTTTTGCTCA
GTGGAGCTGGAGATTTTGTTTCTGGTTTTCTCATTGTTTTGTTGTGTGGGGGTGGATTTT
CACCGAGTGTGGTGCCCCCTACCCCCACCCCCGACGGCCGACTCTGCTTCACTTCCCCAG
GAGTCCAGTATTTTGTACCTCATCCTACAACTTGTCACTCTTGTGGTGTAAATAAAGAGC
ATTCATTGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTAGCGAACTTATTCTTAAGAAATTGTACTTTTTATTGTAAGACGAGTAAAAGGACTA
CTTCAACACTTGTCATATTAAGAAACCAAGTTTAATCTAGCACTTGTGACATACCAATAC
TAGAGTTTATTGTACTTCTGTGGGAAACGTGTTTTAGGGACGCTGCGCAGAAGTCCAAGG
GCGCTGCCTGTCTCTCCCGGGTTGACTCGGAGGCGTTTGTTGGCTTTGGCTCCTCCCGCC
TCTCTTTGCTCGGGGCGAGCGCTGCCCTCACCAGCCCTGGTGGCCGTCGGGCCCGCTGGG
GACCCGGGAGGCCCCGGCGGCCCCTTCCGTACAGCAGTGCCGACTTTTCATTTCTTCTAG
GTGATGTATGGCTAAGATTTCCCTTTCGACTCGGTAGTCGTGGACTGTGCTGCACTGTGC
TTTCAGATTACACTTTGCATCGAAAGGAAACCGTTTCTTCCTTGCGATGGAGCCGAGCTG
GCCCAGCGCAGCTCCCTCTGTCTCTCTGACACGATTCAAAGTCTCCTGTCGAAGGACAAG
GAAAGCGGACAGTTTCTGTTTGTTGTTGCTGTTGGGTTTTTTTCCTTTGGTGTGTGTGCC
CCCAGGGAGGTCCTCTTTTCCAGTTTATGAGAATGACACCCATGTATAATATAGAGAGGC
GGGGGGTTGACCCTTTTCACCCAAGAGCTCCTGACGGGTCTGTCGTGGGAAGCGCGGCGA
CGGCGGTGTCACCTCCCGCGACGGCGGTTCGCCTCTGCTCGCGCAGAGACCTGCTCCGTC
TGTGACTGAGTCGGTTCCCTCTGATTGTCTGGACCTGCCGGTGGTCCTTTCTTTTGCTCA
GTGGAGCTGGAGATTTTGTTTCTGGTTTTCTCATTGTTTTGTTGTGTGGGGGTGGATTTT
CACCGAGTGTGGTGCCCCCTACCCCCACCCCCGACGGCCGACTCTGCTTCACTTCCCCAG
GAGTCCAGTATTTTGTACCTCATCCTACAACTTGTCACTCTTGTGGTGTAAATAAAGAGC
ATTCATTGCCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               449-561, - strand, RNAz p=0.507538

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-561, - strand, RNAz p=0.507538

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-213, gnl|bosTau2|chr3 (85155420-85155213)
               

               
               1-213, gnl|Hg17|chr2 (239707196-239706984)
               

               
               1-213, gnl|Mm7|chr1 (91837552-91837373)
               


               
               310-1032, gnl|bosTau2|chr3 (85155160-85154424)
               

               
               310-1032, gnl|Hg17|chr2 (239706925-239706122)
               

               
               310-1032, gnl|Mm7|chr1 (91837276-91836592)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-213, gnl|bosTau2|chr3 (85155420-85155213)
               

               
               1-213, gnl|Hg17|chr2 (239707196-239706984)
               

               
               1-213, gnl|Mm7|chr1 (91837552-91837373)
               


               
               310-1032, gnl|bosTau2|chr3 (85155160-85154424)
               

               
               310-1032, gnl|Hg17|chr2 (239706925-239706122)
               

               
               310-1032, gnl|Mm7|chr1 (91837276-91836592)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)

	1-213, gnl\|bosTau2\|chr3 (85155420-85155213)
	1-213, gnl\|Hg17\|chr2 (239707196-239706984)
	1-213, gnl\|Mm7\|chr1 (91837552-91837373)

	310-1032, gnl\|bosTau2\|chr3 (85155160-85154424)
	310-1032, gnl\|Hg17\|chr2 (239706925-239706122)
	310-1032, gnl\|Mm7\|chr1 (91837276-91836592)