Non-Coding RNA Search

Ss1.1-rfce27c_e12.5

Sequence:


               
               ATTCATCATCAAGGTTTTCCCGGGACAGTACGAAAGCATCCACTTGTGTGCTTGCACGCT
TTCACACACATACTCATACAACATCCCCTTTGGGAGTCTCTTGTTTTAAGAACAGCCACG
TGGTTTCACTCTCTAAGACCATTTCTGTGGGGGGGGGGAGGCAAGGAAAGGCCTGGCCCC
AGTCCAGCCCACTCCTCTGCCTCCACCTGCACACTCAGGTGTGTCCTACTCTTGTGCAAA
TTCCAAAACCCTGTAGAAAATGGCCAAGACCCTCAAGCATCACCCTGCCCTATACTCCCA
ATAACAGAAAAATTAAGGACACATCTTTCTCAGATGGTGGTGGTTGTTAATTTCAAGTAT
TTAGAAGAATCATTGCTCTGACCCATCCACTGTCTCCTGAGTTTTCTTTTTTCATGTCTA
CAAGGCAAGAATCAGAAAAGGGAGACTAGGTCTGCTTTCTATGAGCAGCTGAGGGAAGGG
GCCGTGCAAACCATGGCTCAAGGTCACCTGCAGAGTTGCCACCAGCTCTCTAAGGGCAGG
AGAAAGAAGAGGAGGCATGTGGCCAAGGGGAGGGCTCATCTTCAGACCTGGCTGGGTCAG
GGCCCTAGAGGGTGAGGCCTCCCACGGGGCCAGGACTAGGCTCCCTGGGTTCCCGACTCC
CACTGTGATGCTGCCCCCATCTTGCCCCACCCAACATTACTCAACACGTTGGAGGGGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCATCATCAAGGTTTTCCCGGGACAGTACGAAAGCATCCACTTGTGTGCTTGCACGCT
TTCACACACATACTCATACAACATCCCCTTTGGGAGTCTCTTGTTTTAAGAACAGCCACG
TGGTTTCACTCTCTAAGACCATTTCTGTGGGGGGGGGGAGGCAAGGAAAGGCCTGGCCCC
AGTCCAGCCCACTCCTCTGCCTCCACCTGCACACTCAGGTGTGTCCTACTCTTGTGCAAA
TTCCAAAACCCTGTAGAAAATGGCCAAGACCCTCAAGCATCACCCTGCCCTATACTCCCA
ATAACAGAAAAATTAAGGACACATCTTTCTCAGATGGTGGTGGTTGTTAATTTCAAGTAT
TTAGAAGAATCATTGCTCTGACCCATCCACTGTCTCCTGAGTTTTCTTTTTTCATGTCTA
CAAGGCAAGAATCAGAAAAGGGAGACTAGGTCTGCTTTCTATGAGCAGCTGAGGGAAGGG
GCCGTGCAAACCATGGCTCAAGGTCACCTGCAGAGTTGCCACCAGCTCTCTAAGGGCAGG
AGAAAGAAGAGGAGGCATGTGGCCAAGGGGAGGGCTCATCTTCAGACCTGGCTGGGTCAG
GGCCCTAGAGGGTGAGGCCTCCCACGGGGCCAGGACTAGGCTCCCTGGGTTCCCGACTCC
CACTGTGATGCTGCCCCCATCTTGCCCCACCCAACATTACTCAACACGTTGGAGGGGTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               334-491, + strand, RNAz p=0.997238

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               334-491, + strand, RNAz p=0.997238

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-535, gnl|bosTau2|chr18 (25326009-25326556)
               

               
               1-535, gnl|Hg17|chr16 (54946711-54947231)
               

               
               1-535, gnl|Mm7|chr8 (92556348-92556861)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-535, gnl|bosTau2|chr18 (25326009-25326556)
               

               
               1-535, gnl|Hg17|chr16 (54946711-54947231)
               

               
               1-535, gnl|Mm7|chr8 (92556348-92556861)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	1-535, gnl\|bosTau2\|chr18 (25326009-25326556)
	1-535, gnl\|Hg17\|chr16 (54946711-54947231)
	1-535, gnl\|Mm7\|chr8 (92556348-92556861)